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Porphyromonas gingivalis Search Results

Record: 1 of 1  
MiniMap IGR0233 IGR0235 IGR0234 IGR0228 IGR0230 IGR0231 IGR0229 IGR0232 PG0272.2 ISPg3, - PG0273 purL, - PG0272 PG0272.1 PG0275 rnfB, - PG0276 rnfD, - PG0278 PG0274 rnfC, - PG0277 PG0272.2 ISPg3, - PG0273 purL, - PG0272 PG0272.1 PG0275 rnfB, - PG0276 rnfD, - PG0278 PG0274 rnfC, - PG0277 Type: IS element, Name: ISPg3 fragment - 6 ISPg3, - PG0273 purL, - PG0272 smf, - PG0271 smf, - PG0271 PG0272.2 PG0272.1 PG0275 rnfB, - PG0276 rnfD, - PG0278 PG0274 rnfC, - PG0277


LANL Gene ID: PG0273

GenBank Locus Tag: PG0299

DNA Molecule Name:
1  

GenBank ID:


Gene Name:
ISPg3  

Definition:
ISPg3-related (IS195-related) element

Cellular Location:
Cytoplasm [Evidence]

Gene Start:
336545

Gene Stop:
336210

Gene Length:
336

Molecular Weight*:
13271

pI*:
10.50

Net Charge*:
10.27

EC:
 

Functional Class:
Transposon functions  

Gene Ontology:

Pathway: pathway table

Primary Evidence:
Lewis JP, Macrina FL, IS195, an insertion sequence-like element associated with protease genes in Porphyromonas gingivalis. Infect Immun 1998 Jul;66(7):3035-42, PubMed: 9632563.

Secondary Evidence:
Kehrenberg C, Werckenthin C, Schwarz S, Tn5706, a transposon-like element from Pasteurella multocida mediating tetracycline resistance. Antimicrob Agents Chemother 1998 Aug;42(8):2116-8, PubMed: 9687418.

Comment:
TIGR ID: PG0299

Human Oral Microbiome Database:
View in HOMD Genome Viewer

Blast Summary:  PSI-Blast Search
Residues 4-92 are 70% similar to residues 34-122 of the previously sequenced gb|AAC26596.1, an ISPg3 transposase. Residues 4-97 are 41% similar to the transposase from Piscirickettsia salmonis (AF184152).

Top Blast Hits:  Updated monthly
Click here to view the entire PsiBlast results.
 gi|34540580|ref|NP_905059.1|  ISPg3, transposase [Porphyromo...   132   8e-30
 gi|3323385|gb|AAC26596.1|  putative protease [Porphyromonas ...   132   9e-30
 gi|34540050|ref|NP_904529.1|  ISPg3, transposase [Porphyromo...   131   9e-30
 gi|34540105|ref|NP_904584.1|  ISPg3, transposase [Porphyromo...   131   1e-29
 gi|34540773|ref|NP_905252.1|  ISPg3, transposase [Porphyromo...   131   1e-29
 gi|61652425|gb|AAX47722.1|  transposase [Porphyromonas gingi...   129   7e-29
 gi|34540967|ref|NP_905446.1|  ISPg3, transposase [Porphyromo...   124   2e-27
 gi|150002628|ref|YP_001297372.1|  putative transposase [Bact...    72   1e-11
 gi|37519719|ref|NP_923096.1|  putative transposase [Gloeobac...    69   1e-10
 gi|37519724|ref|NP_923101.1|  putative transposase [Gloeobac...    67   2e-10


InterPro Summary:  InterProScan

noIPR
unintegrated
unintegrated
signalp [1-29]? NA signalp signal-peptide signal-peptide


COGS Summary:  COGS Search
No hit to the COGs database.
Blocks Summary:  Blocks Search
No significant hit to the Blocks database.

 ProDom Summary:  Protein Domain Search
Residues 45-92 are 72% similar to a (PROTEASE PUTATIVE TRANSPOSASE PLASMID) protein domain (PD190029 which is seen in O87010_PORGI.

Residues 4-43 are 70% similar to a (PUTATIVE PROTEASE PROTEASE) protein domain (PD203593 which is seen in O87010_PORGI.


Paralogs:  Local Blast Search
PG0273 is similar to fragments of PG0236, PG0178, PG1663, PG0919, PG0718, PG1115, all ISPG3-related transposases or fragments. Residues 4-92 are 70% similar to residues 34-122 of PG0236.

Pfam Summary:  Pfam Search
No significant hits to the Pfam 11.0 database

 Structural Feature(s):
Feature Type  Start  Stop
No predicted structural features.  
  
uncleavable signal  
1  
30

Top PDB Hits:
-51% similar to PDB:2HAK Catalytic and ubiqutin-associated domains of MARK1/PAR-1 (E_value = );
-51% similar to PDB:1Y8G Catalytic and ubiqutin-associated domains of MARK2/PAR-1: Inactive double mutant with selenomethionine (E_value = );
-51% similar to PDB:1ZMU Catalytic and ubiqutin-associated domains of MARK2/PAR-1: Wild type (E_value = );
-51% similar to PDB:1ZMV Catalytic and ubiqutin-associated domains of MARK2/PAR-1: K82R mutant (E_value = );
-51% similar to PDB:1ZMW Catalytic and ubiqutin-associated domains of MARK2/PAR-1: T208A/S212A inactive double mutant (E_value = );

Gene Protein Sequence:
MSVRRWNRKVKISDSKIMTILILFHLSKRQNWKAFYLQYITCSGRPKFPH
LVSYNRFVELQNSIGFKQIASLNRCCLGQCTGISLTDKAPLRYLFEKMNF
NDVKELDYPLFD

Gene Nucleotide Sequence:  Sequence Viewer
ATGTCTGTTCGACGTTGGAATAGAAAGGTTAAGATCTCGGACAGCAAGAT
CATGACCATCCTGATCCTGTTTCATCTCTCAAAACGCCAAAATTGGAAAG
CTTTTTATCTTCAATATATCACCTGCTCAGGTCGGCCCAAGTTTCCACAT
CTTGTCTCTTATAATCGCTTTGTGGAGCTACAAAACAGTATAGGCTTCAA
GCAAATAGCATCTCTCAATAGGTGTTGTTTAGGTCAATGTACAGGTATCT
CATTGACCGATAAGGCTCCTCTTAGATATTTATTTGAAAAGATGAATTTC
AATGATGTAAAAGAACTCGATTACCCTCTTTTTGAT

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