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Porphyromonas gingivalis Search Results

Record: 1 of 1  
MiniMap IGR0293 IGR0296 IGR0295 IGR0297 IGR0292 IGR0294 PG0347 rs21, - PG0351 PG0349 PG0348 uvrB, - PG0346 hexA,mutS2, - PG0350 PG0347 rs21, - PG0351 PG0349 PG0348 uvrB, - PG0346 hexA,mutS2, - PG0350 PG0347 rs21, - PG0351 PG0349 PG0348 uvrB, - PG0346 hexA,mutS2, - PG0350


LANL Gene ID: PG0348

GenBank Locus Tag: PG0382

DNA Molecule Name:
1  

GenBank ID:
34540210

Gene Name:


Definition:
conserved hypothetical protein

Cellular Location:
Cytoplasm [Evidence]

Gene Start:
413331

Gene Stop:
414800

Gene Length:
1470

Molecular Weight*:
57423

pI*:
6.90

Net Charge*:
-0.38

EC:
 

Functional Class:
Unknown; Conserved hypothetical  

Gene Ontology:
Cellular component
  GO:0016020    membrane

Molecular function
  GO:0004888    transmembrane receptor activity


Pathway: pathway table

Comment:
TIGR ID: PG0382

Human Oral Microbiome Database:
View in HOMD Genome Viewer

Blast Summary:  PSI-Blast Search
Shares 26% similarity at residues 353 to 471 with pir||S76765, a hypothetical protein in Synechocystis sp. (strain PCC 6803).

Top Blast Hits:  Updated monthly
Click here to view the entire PsiBlast results.
 gi|34540210|ref|NP_904689.1|  hypothetical protein PG0382 [P...   940   0.0  
 gi|156862264|gb|EDO55695.1|  hypothetical protein BACUNI_007...   233   3e-59
 gi|17548351|ref|NP_521691.1|  hypothetical protein RS02992 [...   229   3e-58
 gi|71909265|ref|YP_286852.1|  ATPas [Dechloromonas aromatica...   194   9e-48
 gi|111224682|ref|YP_715476.1|  hypothetical protein; putativ...   114   1e-23
 gi|78484711|ref|YP_390636.1|  TIR [Thiomicrospira crunogena ...    66   5e-09
 gi|88858979|ref|ZP_01133620.1|  TIR domain protein [Pseudoal...    65   7e-09
 gi|16332137|ref|NP_442865.1|  hypothetical protein slr0658 [...    65   1e-08
 gi|71907829|ref|YP_285416.1|  TIR [Dechloromonas aromatica R...    59   6e-07
 gi|85708998|ref|ZP_01040064.1|  hypothetical protein NAP1_07...    55   8e-06


InterPro Summary:  InterProScan

InterPro
IPR000157
Domain
Toll-Interleukin receptor
SSF52200 [349-449]T 1.9E-6 SSF52200 TIR TIR
noIPR
unintegrated
unintegrated
SSF52540 [17-168]T 8.800000000000001E-10 SSF52540 SSF52540 SSF52540


COGS Summary:  COGS Search
No hit to the COGs database.
Blocks Summary:  Blocks Search
No significant hit to the Blocks database.

 ProDom Summary:  Protein Domain Search
Residues 353-471 are 26% similar to a (HYPOTHETICAL 37.6 KD PROTEIN) protein domain (PD133276 which is seen in P74570_SYNY3.


Paralogs:  Local Blast Search
No paralogs found in P. gingivalis.

Pfam Summary:  Pfam Search
No significant hits to the Pfam 11.0 database

 Structural Feature(s):
Feature Type  Start  Stop
No predicted structural features.  
  

Top PDB Hits:
No significant hits to the PDB database (E-value < E-10).

Gene Protein Sequence:
MDLAEVFVTEGFPHLTYVEPLNYYEILIDVKSKKKPVIIEGQTGTGKTST
ILKILSDIKEEIHFEYLSARNIDETTKINQLINSNFEEGGNFVIDDFHRL
VDHLKLRLSNIAKLAADNVANPKYPKLVIIGINQTGRELLKLSPDIAKRF
GVHKIQPATEENVKSIIEMGEKLLNIKFLRHKPIYSESKGDYWLTQHICQ
TICTQNGVINTQEETKQIKLNIKEARRKIIGRLEYIYNDIVKEFCRGKRF
RPSNDAYIKFLESVSKMDDFPIDLNELIGNVDDHHRIAISSIKGHRLDVL
IKEKIDLRNNFYYSKDTKLFNIEDPALQYYIKHIDWNKLYKECGFKKNNG
SYKYDIAISFAGEKRELAEEIADQLQRSDYEVFYDRLYEDNYLGMSLSDE
FERIFTSESKFVVCLLDKNHKKKIWPTFERDCFLEKVQTNEVIPIFLDDT
KFPGIPNDIACIRYEEKQEDKKRSERVQREIIERIISKVQ

Gene Nucleotide Sequence:  Sequence Viewer
ATGGACTTGGCTGAAGTTTTTGTTACTGAAGGATTCCCGCACTTAACATA
TGTCGAACCACTAAACTACTACGAAATTCTAATTGATGTAAAAAGTAAAA
AGAAGCCAGTTATCATAGAGGGACAAACTGGAACAGGGAAGACTTCTACT
ATTTTGAAGATATTATCTGACATAAAAGAAGAAATACATTTTGAATACTT
GTCAGCAAGAAATATAGATGAAACGACGAAAATAAATCAACTCATTAATA
GTAATTTTGAAGAGGGAGGAAATTTTGTTATAGATGATTTCCATAGACTT
GTTGACCATTTGAAGTTGCGTTTGTCTAATATTGCAAAGCTTGCAGCAGA
CAATGTTGCCAATCCCAAATATCCCAAGCTTGTAATCATTGGAATTAATC
AGACAGGAAGAGAATTGCTAAAACTATCTCCTGATATCGCTAAAAGATTT
GGAGTGCATAAAATACAGCCTGCAACAGAAGAAAATGTCAAAAGCATTAT
TGAAATGGGAGAAAAACTTTTGAATATAAAATTTTTGAGGCATAAGCCAA
TCTATTCAGAATCTAAAGGCGATTATTGGTTAACACAACATATATGTCAA
ACAATCTGCACGCAAAACGGAGTTATAAATACTCAAGAAGAAACAAAACA
AATAAAATTAAATATAAAAGAAGCTAGGAGAAAAATAATTGGAAGATTAG
AATATATTTACAATGATATTGTTAAAGAGTTTTGTCGTGGGAAAAGATTT
CGCCCAAGCAATGATGCCTATATTAAATTTTTAGAATCTGTGAGTAAAAT
GGATGATTTTCCAATTGACTTGAACGAACTGATAGGAAATGTAGATGATC
ATCACAGAATAGCAATCTCTAGTATAAAAGGACATAGGTTAGATGTCCTT
ATAAAGGAAAAGATCGATCTGAGAAATAACTTCTATTACTCCAAGGATAC
AAAATTATTTAACATTGAAGATCCTGCGTTGCAATATTACATCAAGCACA
TCGACTGGAACAAGTTGTATAAAGAATGCGGTTTCAAAAAGAACAATGGA
AGCTATAAATATGATATTGCTATTTCTTTTGCTGGTGAAAAGAGGGAGCT
CGCAGAAGAGATTGCGGATCAACTTCAACGATCAGACTATGAGGTGTTTT
ATGATAGACTATATGAGGACAATTATCTAGGAATGTCATTGTCTGATGAG
TTTGAGCGAATTTTTACATCGGAATCCAAATTTGTTGTGTGTCTTCTTGA
TAAAAATCACAAAAAAAAGATTTGGCCGACATTTGAAAGAGATTGTTTTT
TGGAAAAAGTACAAACTAATGAGGTTATTCCAATATTCCTGGATGACACC
AAGTTCCCAGGTATACCTAATGACATTGCTTGCATTCGTTATGAAGAGAA
GCAGGAAGATAAGAAGCGATCTGAAAGAGTGCAGCGAGAAATAATTGAAA
GAATAATTTCTAAGGTTCAA

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