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Porphyromonas gingivalis Search Results

Record: 1 of 1  
MiniMap tRNA-Thr-1 tRNA-Trp tRNA-Tyr-1 IGR0296 IGR0302 IGR0300 IGR0301 IGR0297.1 IGR0295 IGR0299 IGR0297 IGR0298 rs21, - PG0351 PG0354 rl11, - PG0356 nusG, - PG0355 rl1, - PG0357 ef-tu,tufA, - PG0353 PG0352 PG0349 PG0348 hexA,mutS2, - PG0350 rs21, - PG0351 PG0354 rl11, - PG0356 nusG, - PG0355 rl1, - PG0357 ef-tu,tufA, - PG0353 PG0352 PG0349 PG0348 hexA,mutS2, - PG0350 rs21, - PG0351 rl11, - PG0356 nusG, - PG0355 rl1, - PG0357 ef-tu,tufA, - PG0353 PG0352 PG0349 PG0348 hexA,mutS2, - PG0350 PG0354


LANL Gene ID: PG0351

GenBank Locus Tag: PG0385

DNA Molecule Name:
1  

GenBank ID:
34540213

Gene Name:
rs21  

Definition:
30S ribosomal protein S21

Cellular Location:
Cytoplasm [Evidence]

Gene Start:
418919

Gene Stop:
419107

Gene Length:
189

Molecular Weight*:
7397

pI*:
11.18

Net Charge*:
0.00

EC:
 

Functional Class:
Translation; Ribosomal proteins  

Gene Ontology:
Biological process
  GO:0006412    translation

Cellular component
  GO:0005622    intracellular
  GO:0005840    ribosome

Molecular function
  GO:0003735    structural constituent of ribosome


Pathway: pathway table

Comment:
TIGR ID: PG0385

Human Oral Microbiome Database:
View in HOMD Genome Viewer

Blast Summary:  PSI-Blast Search
Numerous hits using gapped BLAST all to ribosomal protein S21, including residues 4-42 are 58% similar to 710340|gb|AAB60205.1| (U20669) ribosomal protein S21 of Myxococcus xanthus and residues 1-63 are 36% similar to 12517644|gb|AAG58199.1|AE005535_11 (AE005535) 30S ribosomal subunit protein S21 of E. coli.

Top Blast Hits:  Updated monthly
Click here to view the entire PsiBlast results.
 gi|120436727|ref|YP_862413.1|  30S ribosomal protein S21 [Gr...    71   2e-11
 gi|34540213|ref|NP_904692.1|  ribosomal protein S21 [Porphyr...    68   2e-10
 gi|126663342|ref|ZP_01734340.1|  30S ribosomal protein S21 [...    68   2e-10
 gi|149372374|ref|ZP_01891562.1|  30S ribosomal protein S21 [...    65   1e-09
 gi|146299693|ref|YP_001194284.1|  ribosomal protein S21 [Fla...    65   1e-09
 gi|83855436|ref|ZP_00948965.1|  ribosomal protein S21 [Croce...    64   2e-09
 gi|150025258|ref|YP_001296084.1|  30S ribosomal protein S21 ...    63   7e-09
 gi|86140291|ref|ZP_01058850.1|  ribosomal protein S21 [Flavo...    62   1e-08
 gi|150008884|ref|YP_001303627.1|  30S ribosomal protein S21 ...    61   2e-08
 gi|88713032|ref|ZP_01107116.1|  ribosomal protein S21 [Flavo...    59   1e-07


InterPro Summary:  InterProScan

InterPro
IPR001911
Family
Ribosomal protein S21
PD005521 [15-52]T 0.0 PD005521 Ribosomal_S21 Ribosomal_S21
PR00976 [5-13]T 2.0E-11 PR00976 RIBOSOMALS21[13-22]T 2.0E-11 PR00976 RIBOSOMALS21[25-35]T 2.0E-11 PR00976 RIBOSOMALS21[37-47]T 2.0E-11 PR00976 RIBOSOMALS21 RIBOSOMALS21
PF01165 [3-57]T 2.49999811956467E-10 PF01165 Ribosomal_S21 Ribosomal_S21
TIGR00030 [2-56]T 4.47812329104199E-14 TIGR00030 S21p S21p
PS01181 [13-25]T 8.0E-5 PS01181 RIBOSOMAL_S21 RIBOSOMAL_S21


COGS Summary:  COGS Search
BeTs to 9 clades of COG0828
COG name: Ribosomal protein S21
Functional Class: J
The phylogenetic pattern of COG0828 is -----q-ceb-hujgpolinx
Number of proteins in this genome belonging to this COG is 1
Blocks Summary:  Blocks Search


 ProDom Summary:  Protein Domain Search


Paralogs:  Local Blast Search
No paralogs found in P. gingivalis.

Pfam Summary:  Pfam Search
Residues 3 to 57 (E-value = 2.2e-13) place PG0351 in the Ribosomal_S21 family which is described as Ribosomal protein S21 (PF01165)

 Structural Feature(s):
Feature Type  Start  Stop
No predicted structural features.  
  

Top PDB Hits:
No significant hits to the PDB database (E-value < E-10).

Gene Protein Sequence:
MIVVPVKEGENIERALKRFKRKFEKTGAVRELRARQAFEKPSVAKRKKMQ
KAIYVKQLQVAEE

Gene Nucleotide Sequence:  Sequence Viewer
ATGATCGTAGTTCCAGTTAAAGAAGGCGAGAACATCGAAAGAGCACTGAA
ACGCTTCAAAAGAAAGTTTGAAAAAACCGGAGCAGTACGCGAATTGCGTG
CTCGTCAGGCTTTTGAAAAGCCCTCGGTGGCCAAGCGCAAGAAGATGCAA
AAAGCCATCTACGTGAAGCAGCTTCAGGTTGCCGAAGAA

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