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Porphyromonas gingivalis Search Results

Record: 1 of 1  
MiniMap tRNA-Thr-1 tRNA-Trp tRNA-Tyr-1 IGR0303 IGR0302 IGR0300 IGR0304 IGR0301 IGR0297.1 IGR0305 IGR0299 IGR0297 IGR0298 rs21, - PG0351 PG0354 rl7, - PG0359 rl11, - PG0356 rl10, - PG0358 nusG, - PG0355 rl1, - PG0357 ef-tu,tufA, - PG0353 PG0352 hexA,mutS2, - PG0350 rpoB, - PG0360 rs21, - PG0351 PG0354 rl7, - PG0359 rl11, - PG0356 rl10, - PG0358 nusG, - PG0355 rl1, - PG0357 ef-tu,tufA, - PG0353 PG0352 hexA,mutS2, - PG0350 rpoB, - PG0360 rs21, - PG0351 rl7, - PG0359 rl11, - PG0356 rl10, - PG0358 nusG, - PG0355 rl1, - PG0357 ef-tu,tufA, - PG0353 PG0352 hexA,mutS2, - PG0350 rpoB, - PG0360 PG0354


LANL Gene ID: PG0354

GenBank Locus Tag:

DNA Molecule Name:
1  

GenBank ID:


Gene Name:


Definition:
conserved hypothetical protein(possible translocase secE subunit)

Cellular Location:
Periplasm, Inner membrane, Cytoplasm [Evidence]

Gene Start:
422084

Gene Stop:
422329

Gene Length:
246

Molecular Weight*:
9237

pI*:
9.30

Net Charge*:
1.22

EC:
 

Functional Class:
Unknown; Conserved hypothetical  

Gene Ontology:
Biological process
  GO:0006605    protein targeting
  GO:0006886    intracellular protein transport
  GO:0009306    protein secretion

Cellular component
  GO:0016020    membrane
  GO:0016021    integral to membrane

Molecular function
  GO:0015450    protein translocase activity


Pathway: pathway table

Comment:
Translocase subunit A, secA, is PG0468.

NO TIGR ID corresponds to this gene.

Human Oral Microbiome Database:
View in HOMD Genome Viewer

Blast Summary:  PSI-Blast Search
No significant hit found in gapped BLAST with E value less than e-04.

Top Blast Hits:  Updated monthly
Click here to view the entire PsiBlast results.
 gi|150008880|ref|YP_001303623.1|  putative preprotein transl...    72   1e-11
 gi|154491727|ref|ZP_02031353.1|  hypothetical protein PARMER...    70   4e-11
 gi|156862089|gb|EDO55520.1|  hypothetical protein BACUNI_008...    66   6e-10
 gi|53715483|ref|YP_101475.1|  preprotein translocase SecE su...    65   2e-09
 gi|153805944|ref|ZP_01958612.1|  hypothetical protein BACCAC...    62   9e-09
 gi|126646995|ref|ZP_01719505.1|  putative preprotein translo...    55   1e-06
 gi|149278896|ref|ZP_01885031.1|  elongation factor Tu [Pedob...    52   9e-06


InterPro Summary:  InterProScan

InterPro
IPR001901
Family
Protein secE/sec61-gamma protein
PF00584 [21-78]T 4.8e-08 PF00584 SecE SecE
InterPro
IPR005807
Family
SecE subunit of protein translocation complex
TIGR00964 [22-79]T 3.8e-09 TIGR00964 secE_bact: preprotein translocase, SecE sub secE_bact: preprotein translocase, SecE sub
noIPR
unintegrated
unintegrated
tmhmm [45-65]? NA tmhmm transmembrane_regions transmembrane_regions


COGS Summary:  COGS Search
BeTs to 9 clades of COG0690
COG name: Preprotein translocase subunit SecE
Functional Class: N
The phylogenetic pattern of COG0690 is -----qvcebrhujgpolinx
Number of proteins in this genome belonging to this COG is 1
Blocks Summary:  Blocks Search
***** IPB001901 (Protein secE/sec61-gamma protein) with a combined E-value of 9.5e-07.
    IPB001901    26-67


 ProDom Summary:  Protein Domain Search
No significant hit to the ProDom database.

Paralogs:  Local Blast Search
No paralogs found in P. gingivalis.

Pfam Summary:  Pfam Search
Residues 21 to 78 (E-value = 4.4e-08) place PG0354 in the SecE family which is described as SecE/Sec61-gamma subunits of protein translocation complex (PF00584)

 Structural Feature(s):
Feature Type  Start  Stop
transmembrane  
50  
70
transmembrane  
50  
66

Top PDB Hits:
No significant hits to the PDB database (E-value < E-10).

Gene Protein Sequence:
VSGVRVSQPVQNFQSMKLFNKIGTSITDSYNELVHKVSWPTRSELTNSAV
VVMIASLIIALFVFVVDTAFERIMELVYKLVF

Gene Nucleotide Sequence:  Sequence Viewer
GTGTCGGGAGTTCGAGTCTCTCAACCCGTGCAAAATTTTCAATCAATGAA
ACTATTCAATAAAATAGGGACTTCGATCACGGATTCCTATAATGAGCTTG
TACATAAGGTTTCTTGGCCTACCAGATCCGAGCTGACAAACAGTGCTGTA
GTAGTGATGATTGCTTCCTTAATCATTGCTCTTTTTGTGTTTGTTGTCGA
TACTGCTTTCGAACGGATCATGGAACTGGTATATAAATTGGTGTTC

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