Basic Search | Intermediate Search | Advanced Search | Gene Image Map |  Sequence Search |  Protein Motif Search |  Repeat Search |  DNA/RNA Motif Search |  Home

Porphyromonas gingivalis Search Results

Record: 1 of 1  
MiniMap IGR0316 IGR0312 IGR0314 IGR0315 IGR0317 IGR0313 PG0369 PG0370 ileS, - PG0372 PG0374 hexB,mutL, - PG0377 PG0373 PG57, - PG0376 PG0375 PG0369 PG0370 ileS, - PG0372 PG0374 hexB,mutL, - PG0377 PG0373 PG57, - PG0376 PG0375 PG0370 ileS, - PG0372 PG0374 hexB,mutL, - PG0377 PG0369 PG0373 PG57, - PG0376 PG0375


LANL Gene ID: PG0375

GenBank Locus Tag: PG0410

DNA Molecule Name:
1  

GenBank ID:
34540233

Gene Name:


Definition:
conserved hypothetical protein

Cellular Location:
Outer membrane, Cytoplasm, Extracellular [Evidence]

Gene Start:
442757

Gene Stop:
446638

Gene Length:
3882

Molecular Weight*:
144008

pI*:
5.50

Net Charge*:
-22.12

EC:
 

Functional Class:
Unknown  

Gene Ontology:
Biological process
  GO:0006412    translation
  GO:0009401    phosphoenolpyruvate-dependent sugar phosphotransferase system

Cellular component
  GO:0005622    intracellular
  GO:0005840    ribosome

Molecular function
  GO:0003735    structural constituent of ribosome
  GO:0005351    sugar porter activity


Pathway: pathway table

Primary Evidence:
Zhang Y, Wang T, Chen W, Yilmaz O, Park Y, Jung IY, Hackett M, Lamont RJ.
Differential protein expression by Porphyromonas gingivalis in response to secreted epithelial cell components.
Proteomics. 2005 Jan;5(1):198-211.
PMID: 15619293

Chen T, Hosogi Y, Nishikawa K, Abbey K, Fleischmann RD, Walling J, Duncan MJ.
Comparative whole-genome analysis of virulent and avirulent strains of Porphyromonas gingivalis.
J Bacteriol. 2004 Aug;186(16):5473-9.
PMID: 15292149

Comment:
TIGR ID: PG0410. Reported by Chen et al., 2004, to be highly divergent in ATCC 33277.

Human Oral Microbiome Database:
View in HOMD Genome Viewer

Blast Summary:  PSI-Blast Search
Matches weakly to 54303602 from Photobacterium profundum SS9.

Corresponds to N-terminal stretch of kgp (PG1605).

Top Blast Hits:  Updated monthly
Click here to view the entire PsiBlast results.
 gi|34540233|ref|NP_904712.1|  hypothetical protein PG0410 [P...  2554   0.0  
 gi|121543254|ref|ZP_01674943.1|  hypothetical protein DoleDR...    75   2e-11
 gi|91200969|emb|CAJ74026.1|  hypothetical protein [Candidatu...    73   2e-10
 gi|153867831|ref|ZP_01998057.1|  secreted protein [Beggiatoa...    66   2e-08


InterPro Summary:  InterProScan

InterPro
IPR001865
Family
Ribosomal protein S2
PS00962 [17-28]? NA PS00962 RIBOSOMAL_S2_1 RIBOSOMAL_S2_1
InterPro
IPR002114
PTM
Phosphotransferase system, HPr serine phosphorylation site
PS00589 [1130-1145]? NA PS00589 PTS_HPR_SER PTS_HPR_SER
InterPro
IPR006626
Repeat
Parallel beta-helix repeat
SM00710 [810-832]T 4.7e+02 SM00710 PbH1[849-870]T 6.1e+03 SM00710 PbH1[897-918]T 2.9e+03 SM00710 PbH1 PbH1
noIPR
unintegrated
unintegrated
signalp [1-31]? NA signalp signal-peptide signal-peptide


COGS Summary:  COGS Search
No hit to the COGs database.
Blocks Summary:  Blocks Search
No significant hit to the Blocks database.

 ProDom Summary:  Protein Domain Search
No significant hit to the ProDom database.

Paralogs:  Local Blast Search
Residues 13 to 571 share 21% identity with PG1605, a porphypain polyprotein; lys-X proteinase/hemagglutinin.

Pfam Summary:  Pfam Search
No significant hits to the Pfam 11.0 database

 Structural Feature(s):
Feature Type  Start  Stop
uncleavable signal  
1  
33
non-globular  
755  
931

Top PDB Hits:
No significant hits to the PDB database (E-value < E-10).

Gene Protein Sequence:
VIQKFTNVKLNDMRKILSFLMMCSLHLGLQSQTWHGDPDSVAALPSIGIQ
ESSCTRITFEVVFPGFYSVEKREGNQVFQRISMPGCGSFGNLGEAELPVL
KKMIAVPEFSTANVAVKIKETETFDNYNIYPNPTYVVEELPEGGTYLVEA
FAINNDYYSQNVSLPSTHYVYSQDGYFRSQRFIEVTLYPFRYNPVRQEIL
FAKKIEVTITFDNPQPPLQKNTGIFNKVASSAFINYEADGKSAIENDMVF
SRGTTTYISGNVASNLPQNCDYLVIYDDMFNVNQQPHDEIKRLCEHRAFY
NGFDVAAVSIKDVLNSFPSNATSYINETKLKNFIRSVYNQSNAKRTLDGK
LGYVLLIGKPLSKYLADTDNTKVPTSFIHNVSLIPSHPTFGSICASDYFF
SCVSPLDTVGDLFIGRFSVTNAHELHNLIEKTINKEISYNPIAHKNILYA
EGKGCDAPILRLFLKEIASGYTVNSILKSNQVSAIDSIFDCLNNGSHHFY
FNTHGMPTVWGIGQGLDVNTLTARLNNTSSQGLCTSLSCSSAVADSTIRS
LGEVLTTYAPNKGFSAFLGGSRATQYAVYLEGPCPPSEFYEYLPYSLYHN
LSTVVGEMLLSSIINTNSVDTYSKFNFNLLGDPALNIMAHGMEVSNCITL
PNNTIISSPITIKNGGCLKIPEKGVLHFTNNGSIQVMSGGTLEIGNQAKI
SGETGANPTFITVYGDGLAINKQVEIDNIDRLNLFSTHSVMPKFHFDSVK
FNSAPLYTTNCIVEISNCEFTNRSDIISKNCDLSVENSMFSSSGITVFKP
MATSSITGLSTKAKITDNTFFATGNFAYHITNTPGLTATSNAAIKLDNIP
EYYISGNKIVNCDEALVLNNSGNRTNRLHNITRNVIKNCRIGSTLYNSYG
IYNRNKISNNHIGVRLLNNSCFYFDNAPVINEEDKQTFISNRTWQLYSSN
GTFPLNFHYNSLQGGDTDTWIYNDTYTNRYIDVSNNHWGNNDLFDPNQVF
NTPDLFIWIPFWDGLPNGRSGNSSAEAVEFQTALDCIGNSDYLSAKVALK
MMVETYPESDFAIAALKELFRIEKMSGNDYEGLKDYFRSNPTIISSQNLF
PTADFLSARCDIVCENYQSAIDWYENRLNSEISYQDSVFAVIDLGDIYWN
MQLDSLRGTGIDLNILSCEQRKSLESHQNVKNYLLSTLPESTGTLLPPLE
CNKSSLDKSKIISISPNPAKAVVTIIYYTDNPSCSVIKIYGINGASADIT
GLPKHLSEGYYSIQFNTSNFDPGFYLVTLNVDQKIIDTEKLRIK

Gene Nucleotide Sequence:  Sequence Viewer
GTGATACAAAAATTTACTAATGTAAAACTAAATGATATGCGAAAAATTTT
GAGCTTTTTGATGATGTGCTCTCTGCATTTAGGTCTACAATCTCAGACTT
GGCATGGAGATCCGGACTCAGTGGCAGCCCTACCTTCTATCGGTATTCAA
GAGTCAAGTTGTACCCGAATCACGTTCGAGGTTGTTTTCCCCGGATTTTA
TAGTGTGGAAAAACGAGAAGGCAACCAAGTCTTTCAGCGCATTTCCATGC
CGGGTTGTGGCTCGTTTGGGAATCTGGGCGAAGCTGAATTGCCTGTTTTG
AAAAAGATGATAGCCGTTCCGGAATTTTCAACAGCTAACGTTGCTGTAAA
AATCAAAGAGACGGAGACATTCGACAATTATAATATCTATCCTAATCCTA
CCTATGTCGTAGAGGAGTTGCCTGAGGGGGGGACTTATCTGGTAGAGGCT
TTCGCGATAAACAATGACTATTATAGCCAAAATGTAAGCCTCCCTTCTAC
TCACTATGTCTATTCTCAAGACGGGTATTTTCGCTCACAAAGATTTATCG
AAGTTACCCTGTATCCTTTTCGATACAACCCTGTCCGACAAGAAATTCTA
TTTGCAAAAAAAATCGAGGTTACAATAACTTTCGATAATCCTCAGCCACC
TTTACAAAAAAACACCGGCATATTTAACAAAGTAGCCTCCTCTGCATTTA
TTAATTATGAAGCTGATGGCAAATCGGCGATAGAAAATGATATGGTGTTC
AGTCGTGGTACAACAACGTACATAAGCGGAAATGTTGCCAGCAACCTCCC
TCAGAACTGTGACTACTTGGTTATTTACGATGATATGTTCAACGTAAATC
AACAACCACACGACGAAATCAAACGGCTGTGCGAACATAGAGCCTTCTAC
AACGGCTTTGATGTAGCTGCTGTAAGTATAAAGGACGTATTGAATAGCTT
CCCATCAAATGCCACCTCATACATCAACGAAACTAAACTGAAAAATTTCA
TTCGCTCAGTTTACAACCAAAGCAATGCGAAGAGGACTTTAGATGGCAAA
CTGGGATACGTGCTACTGATCGGAAAACCATTGAGCAAATATTTGGCTGA
CACTGATAATACAAAAGTCCCAACCTCTTTTATTCATAATGTCTCCTTAA
TTCCAAGTCATCCAACTTTTGGTTCCATATGCGCCTCCGACTATTTTTTT
AGTTGTGTTTCGCCCCTTGATACTGTCGGCGATTTGTTTATCGGTCGATT
TAGCGTCACCAATGCTCATGAATTGCACAATCTGATTGAAAAGACTATCA
ACAAAGAAATCTCATATAATCCTATTGCACACAAAAATATTCTTTACGCA
GAAGGGAAAGGCTGCGATGCTCCAATCTTACGTTTATTCTTAAAAGAAAT
CGCCTCTGGTTACACAGTCAACTCTATCTTAAAATCTAATCAGGTCTCTG
CAATAGACTCGATATTTGACTGCTTGAATAATGGTTCCCATCATTTTTAT
TTTAACACTCATGGAATGCCGACTGTTTGGGGGATAGGGCAGGGACTCGA
CGTCAATACTCTAACAGCCCGATTGAACAATACATCTTCGCAGGGATTAT
GTACGAGTCTATCATGTAGTTCGGCTGTAGCAGATTCAACTATTAGATCG
CTTGGAGAAGTCCTGACCACATACGCACCTAACAAGGGATTCTCGGCTTT
CTTAGGAGGAAGCAGAGCCACCCAATATGCCGTTTATTTAGAAGGCCCCT
GTCCTCCGTCAGAATTTTATGAATATTTACCTTATTCTTTATATCACAAT
CTCTCGACTGTTGTTGGCGAAATGTTGCTATCATCCATTATCAATACTAA
TTCTGTTGATACGTATTCGAAATTCAACTTCAATTTGCTTGGCGACCCTG
CACTAAACATTATGGCTCATGGCATGGAGGTTAGTAATTGTATTACACTA
CCAAACAACACCATTATAAGCAGTCCGATAACAATAAAAAATGGTGGCTG
CCTAAAAATACCGGAAAAAGGAGTTTTGCATTTTACTAATAATGGCTCCA
TACAAGTCATGTCCGGAGGAACTCTGGAAATAGGCAATCAGGCTAAAATA
TCCGGAGAGACCGGTGCTAACCCCACCTTTATTACCGTTTACGGCGATGG
TCTTGCGATTAACAAGCAGGTAGAGATAGACAATATAGACCGACTTAACT
TGTTTTCTACGCATTCGGTCATGCCCAAATTTCATTTTGACAGTGTGAAA
TTCAACAGTGCCCCGCTGTATACAACGAACTGTATTGTGGAGATAAGCAA
TTGCGAATTTACCAATCGAAGTGACATTATTTCAAAGAATTGTGACCTAA
GCGTTGAAAACAGTATGTTTAGCAGTTCGGGGATAACGGTATTCAAGCCT
ATGGCTACAAGCTCCATCACCGGATTATCTACAAAAGCAAAGATTACCGA
CAATACTTTTTTTGCGACAGGAAACTTCGCCTACCATATCACAAACACGC
CAGGCTTAACAGCAACCTCCAATGCTGCCATCAAGTTAGACAATATTCCT
GAGTATTACATTTCCGGTAATAAAATAGTCAATTGCGATGAGGCTCTTGT
ACTAAATAATAGTGGCAACAGAACGAACAGACTCCACAATATCACACGGA
ATGTGATAAAAAACTGTAGGATTGGGAGCACGCTTTATAATTCCTATGGT
ATTTACAACCGAAATAAGATCAGTAACAATCATATAGGAGTACGTCTCCT
CAACAACAGTTGTTTTTATTTCGATAATGCTCCTGTAATCAATGAAGAAG
ATAAGCAGACGTTTATTTCTAATAGGACTTGGCAGCTCTATTCATCAAAC
GGTACATTCCCTCTCAACTTCCATTACAACAGCTTGCAGGGGGGAGATAC
AGATACATGGATTTACAACGACACGTATACGAATCGCTATATTGACGTTT
CAAATAATCACTGGGGCAACAATGATTTGTTTGATCCGAATCAGGTTTTC
AATACGCCAGACTTGTTCATTTGGATACCTTTTTGGGATGGATTGCCAAA
TGGGAGATCGGGCAATAGCTCTGCTGAAGCAGTAGAATTCCAAACAGCAT
TGGACTGTATTGGCAATAGCGATTATCTTTCGGCAAAAGTGGCTCTCAAG
ATGATGGTTGAAACCTACCCGGAATCCGACTTTGCAATAGCTGCTTTGAA
GGAATTGTTCAGGATAGAGAAAATGTCAGGCAACGATTACGAAGGCTTGA
AAGATTATTTCAGATCCAATCCAACCATCATCTCTTCCCAGAACTTGTTC
CCGACAGCTGATTTCCTGTCTGCGCGATGCGATATTGTGTGTGAAAACTA
TCAGTCTGCCATCGATTGGTACGAAAATCGCTTGAATAGTGAAATCTCCT
ATCAGGACAGTGTTTTTGCAGTCATTGACCTTGGTGACATTTATTGGAAT
ATGCAGTTAGACTCACTCAGAGGGACTGGTATAGATTTGAACATACTTTC
CTGTGAACAAAGGAAATCGCTCGAAAGCCATCAAAATGTAAAAAATTATT
TGTTGTCAACTCTTCCCGAATCAACAGGTACTCTCCTGCCTCCATTAGAA
TGCAACAAATCAAGCCTTGATAAATCCAAGATAATCTCTATTTCGCCCAA
TCCGGCGAAAGCTGTTGTAACAATAATCTACTATACCGATAACCCTTCCT
GTTCTGTAATAAAAATATATGGAATAAATGGAGCCTCGGCTGATATAACC
GGGTTGCCCAAACATCTATCCGAAGGTTATTACAGCATACAGTTCAATAC
ATCCAACTTTGATCCCGGTTTCTACCTGGTAACGCTAAATGTTGATCAGA
AAATTATAGATACGGAAAAATTACGAATCAAA

Los Alamos National Laboratory • Est 1943

Operated by Los Alamos National Security, LLC for the U.S. Department of Energy's National Nuclear Security Administration
Inside | © Copyright 2006 LANS LLC All rights reserved | Disclaimer/Privacy