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Porphyromonas gingivalis Search Results

Record: 1 of 1  
MiniMap IGR0329 IGR0330 IGR0325 IGR0327 IGR0326 IGR0323 IGR0331 IGR0324 IGR0328 PG0392.1 PG0387 ISPg5, - PG0392 PG0390 PG0386 PG0385 ISPg5, - PG0391 fmu,nol1, - PG0395 PG0389 PG0394 PG0393 PG0392.1 PG0387 ISPg5, - PG0392 PG0390 PG0386 PG0385 ISPg5, - PG0391 fmu,nol1, - PG0395 PG0389 PG0394 PG0393 Type: IS element, Name: ISPg5 - 8 PG0387 ISPg5, - PG0392 PG0390 PG0386 PG0385 ISPg5, - PG0391 fmu,nol1, - PG0395 PG0392.1 PG0394 PG0393 PG0388 PG0389 PG0388


LANL Gene ID: PG0392

GenBank Locus Tag: PG0427

DNA Molecule Name:
1  

GenBank ID:
34540249

Gene Name:
ISPg5  

Definition:
ISPg5-related orf-1

Cellular Location:
Cytoplasm [Evidence]

Gene Start:
465631

Gene Stop:
465245

Gene Length:
387

Molecular Weight*:
14783

pI*:
9.60

Net Charge*:
2.96

EC:
 

Functional Class:
Transposon functions  

Gene Ontology:

Pathway: pathway table

Primary Evidence:
Califano,J.V., Kitten,T., Lewis,J.P., Macrina,F.L., Fleischmann,R.D., Fraser,C.M., Duncan,M.J. and Dewhirst,F.E. Characterization of Porphyromonas gingivalis insertion sequence-like element ISPg5. Infect. Immun. 68 (9), 5247-5253 (2000) 20407340

Chen T, Hosogi Y, Nishikawa K, Abbey K, Fleischmann RD, Walling J, Duncan MJ.
Comparative whole-genome analysis of virulent and avirulent strains of Porphyromonas gingivalis.
J Bacteriol. 2004 Aug;186(16):5473-9.
PMID: 15292149

Comment:
See PG0391 for associated transposase.

TIGR ID: PG0427. Reported by Chen et al., 2004, to be highly divergent in ATCC 33277.

Human Oral Microbiome Database:
View in HOMD Genome Viewer

Blast Summary:  PSI-Blast Search
PG0392 is equivalent to the previously reported gbAAF69127.1 in GenBANK.

Otherwise, no hits in gapped BLAST.

Top Blast Hits:  Updated monthly
Click here to view the entire PsiBlast results.
 gi|34540249|ref|NP_904728.1|  ISPg5, transposase Orf1 [Porph...   219   3e-56
 gi|34540398|ref|NP_904877.1|  ISPg5, transposase Orf1 [Porph...   218   6e-56
 gi|34539889|ref|NP_904368.1|  ISPg5 transposase Orf1 [Porphy...   218   1e-55
 gi|34540695|ref|NP_905174.1|  ISPg5, transposase Orf1 [Porph...   217   2e-55
 gi|7767502|gb|AAF69127.1|AF224744_1  unknown [Porphyromonas ...   210   3e-53
 gi|34540278|ref|NP_904757.1|  ISPg5, transposase Orf1 [Porph...   179   5e-44
 gi|156108434|gb|EDO10179.1|  hypothetical protein BACOVA_045...    73   5e-12
 gi|156112512|gb|EDO14257.1|  hypothetical protein BACOVA_000...    70   3e-11
 gi|29347279|ref|NP_810782.1|  hypothetical protein BT_1869 [...    69   1e-10


InterPro Summary:  InterProScan

No hits reported.

COGS Summary:  COGS Search
No hit to the COGs database.
Blocks Summary:  Blocks Search
No significant hit to the Blocks database.

 ProDom Summary:  Protein Domain Search
No significant hit to the ProDom database.

Paralogs:  Local Blast Search
PG0392 is paralogously related to PG1862, PG1797, PG1490, PG1437, PG0033, PG0532, PG0008, PG1246, PG0840 and PG0419, all ORFs associated with ISPg5-related transposases.

Pfam Summary:  Pfam Search
No significant hits to the Pfam 11.0 database

 Structural Feature(s):
Feature Type  Start  Stop
coil-coil  
79  
110

Top PDB Hits:
No significant hits to the PDB database (E-value < E-10).

Gene Protein Sequence:
LGGMQPVSIMGKHLNNFERLSILEDYLSGSDSKVAIEQKYGLSHGLIRSW
LSKFGLEDKVHPVPMKVSQSPQSELPLNEKEELEQLRKENRVLKSRLKRE
ELGHQAYKLLVELAEETYGIRIRKNSEAK

Gene Nucleotide Sequence:  Sequence Viewer
TTGGGCGGGATGCAACCAGTATCCATTATGGGCAAACATTTAAACAACTT
TGAACGCCTTAGCATCCTTGAGGATTACCTCTCGGGGTCAGATAGCAAAG
TAGCCATTGAGCAGAAATATGGTCTAAGTCATGGTCTCATTCGCTCTTGG
CTTAGTAAATTTGGACTCGAAGATAAAGTTCATCCGGTCCCAATGAAAGT
GTCCCAATCCCCCCAGAGTGAGCTACCCCTGAACGAAAAAGAAGAGTTAG
AGCAGCTACGTAAAGAGAATCGTGTCCTCAAGAGTCGTCTCAAGCGAGAA
GAACTAGGGCATCAAGCCTACAAGCTACTTGTAGAGTTGGCAGAAGAAAC
CTACGGCATCCGGATACGAAAAAACTCCGAAGCCAAG

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