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Porphyromonas gingivalis Search Results

Record: 1 of 1  
MiniMap IGR0354 IGR0350 IGR0351 IGR0353 IGR0348 IGR0352 IGR0349 IGR0347 PG0415.1 ISPg5, - PG0419 ISPg5, - PG0418 folC, - PG0423 ISPgX, - PG0421 PG0422 ISPg1, - PG0420 PG0416 PG0415.1 ISPg5, - PG0419 ISPg5, - PG0418 folC, - PG0423 ISPgX, - PG0421 PG0422 ISPg1, - PG0420 PG0416 Type: IS element, Name: ISPg1 - 2 Type: IS element, Name: ISPg5 - 8 Type: IS element, Name: ISPg5 - 8 PG0415.1 ISPg5, - PG0419 ISPg5, - PG0418 folC, - PG0423 ISPgX, - PG0421 PG0422 ISPg1, - PG0420 PG0416 PG0417 PG0417


LANL Gene ID: PG0419

GenBank Locus Tag: PG0459

DNA Molecule Name:
1  

Genomic Island ID:
22

GenBank ID:
34540278

 Gene Name:
ISPg5  

 Definition:
ISPg5-related orf-1

 Cellular Location:
Cytoplasm [Evidence]

 Gene Start:
501985

Gene Stop:
501611

Gene Length:
375

Molecular Weight*:
14397

pI*:
10.50

Net Charge*:
6.72

EC:
 

 Functional Class:
Transposon functions  

 Gene Ontology:

Pathway: pathway table

 Primary Evidence:
Califano,J.V., Kitten,T., Lewis,J.P., Macrina,F.L.,
Fleischmann,R.D., Fraser,C.M., Duncan,M.J. and Dewhirst,F.E.
Characterization of Porphyromonas gingivalis insertion
sequence-like element ISPg5.
Infect. Immun. 68 (9), 5247-5253 (2000)
20407340

Chen T, Hosogi Y, Nishikawa K, Abbey K, Fleischmann RD, Walling J, Duncan MJ.
Comparative whole-genome analysis of virulent and avirulent strains of Porphyromonas gingivalis.
J Bacteriol. 2004 Aug;186(16):5473-9.
PMID: 15292149

 Comment:
See PG0418 for associated transposase.

Member of the IS3 family of insertion elements.

TIGR ID: PG0459. Reported by Chen et al., 2004, to be highly divergent in ATCC 33277.

 Human Oral Microbiome Database:
View in HOMD Genome Viewer

 Blast Summary:  PSI-Blast Search
PG0419 is equivalent to the previously reported gbAAF69127.1 in GenBANK.

Otherwise, no hits in gapped BLAST.

 Top Blast Hits:  Updated monthly
Click here to view the entire PsiBlast results.
 gi|34540278|ref|NP_904757.1|  ISPg5, transposase Orf1 [Porph...   203   2e-51
 gi|34540695|ref|NP_905174.1|  ISPg5, transposase Orf1 [Porph...   181   1e-44
 gi|34540249|ref|NP_904728.1|  ISPg5, transposase Orf1 [Porph...   179   3e-44
 gi|34540398|ref|NP_904877.1|  ISPg5, transposase Orf1 [Porph...   179   3e-44
 gi|34539889|ref|NP_904368.1|  ISPg5 transposase Orf1 [Porphy...   178   9e-44
 gi|7767502|gb|AAF69127.1|AF224744_1  unknown [Porphyromonas ...   178   1e-43
 gi|156108434|gb|EDO10179.1|  hypothetical protein BACOVA_045...    73   5e-12
 gi|156112512|gb|EDO14257.1|  hypothetical protein BACOVA_000...    71   2e-11
 gi|29347279|ref|NP_810782.1|  hypothetical protein BT_1869 [...    69   1e-10


InterPro Summary:  InterProScan

No hits reported.

COGS Summary:  COGS Search
No hit to the COGs database.
Blocks Summary:  Blocks Search
No significant hit to the Blocks database.

 ProDom Summary:  Protein Domain Search
No significant hit to the ProDom database.

Paralogs:  Local Blast Search
PG0419 is paralogously related to PG1862, PG1797, PG1490, PG1437, PG0033, PG0532, PG0392, PG1246, PG0840 and PG0008, all ORFs associated with ISPg5-related transposases.

Pfam Summary:  Pfam Search
No significant hits to the Pfam 11.0 database

 Structural Feature(s):
Feature Type  Start  Stop
coil-coil  
69  
106

Top PDB Hits:
No significant hits to the PDB database (E-value < E-10).

Gene Protein Sequence:
VQRSLMGKHLSNFERLAILEDYLSGAQSQGAIGRKYGISRGLIPQWLRKF
GLEDKVHPVPMKASQSPQSELTLNEKEELEQLRKENRVLKSRLKREELGH
QAYKLLVELAEETYGIRIRKNSEAK

Gene Nucleotide Sequence:  Sequence Viewer
GTGCAAAGGTCTCTTATGGGCAAACATTTAAGCAACTTTGAACGCCTTGC
CATCCTAGAGGATTACCTCTCTGGGGCACAGAGCCAAGGTGCCATTGGAA
GGAAATATGGCATCAGTCGTGGTCTTATTCCTCAATGGCTTCGTAAATTT
GGACTCGAAGATAAAGTTCATCCGGTCCCCATGAAAGCGTCCCAATCCCC
CCAGAGTGAGCTGACCCTCAATGAAAAAGAAGAGTTGGAGCAACTACGTA
AAGAGAATCGTGTCCTCAAGAGTCGTCTCAAGCGAGAAGAACTAGGGCAT
CAAGCCTACAAGCTACTTGTTGAGTTGGCAGAAGAAACCTACGGCATCCG
GATACGAAAAAACTCCGAAGCCAAG

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