Basic Search | Intermediate Search | Advanced Search | Gene Image Map |  Sequence Search |  Protein Motif Search |  Repeat Search |  DNA/RNA Motif Search |  Home

Porphyromonas gingivalis Search Results

Record: 1 of 1  
MiniMap tRNA-Leu-2 IGR0490 IGR0495 IGR0496 IGR0497.1 IGR0493 IGR0489 IGR0492 IGR0497 IGR0494 IGR0491 rl34, - PG0592.1 PG0590 PG0588 PG0589 maf, - PG0593 fecE,fepC,htrC, - PG0584 htrB, - PG0585 htrD, - PG0583 PG0592 htrA, - PG0586 serB, - PG0591 PG0587 rl34, - PG0592.1 PG0590 PG0588 PG0589 maf, - PG0593 fecE,fepC,htrC, - PG0584 htrB, - PG0585 htrD, - PG0583 PG0592 htrA, - PG0586 serB, - PG0591 PG0587 rl34, - PG0592.1 PG0590 PG0589 maf, - PG0593 fecE,fepC,htrC, - PG0584 htrB, - PG0585 htrD, - PG0583 PG0592 htrA, - PG0586 serB, - PG0591 PG0588 PG0587


LANL Gene ID: PG0588

GenBank Locus Tag: PG0650

DNA Molecule Name:
1  

GenBank ID:
34540451

Gene Name:


Definition:
conserved hypothetical protein

Cellular Location:
Cytoplasm [Evidence]

Gene Start:
703055

Gene Stop:
702675

Gene Length:
381

Molecular Weight*:
14291

pI*:
4.40

Net Charge*:
-8.85

EC:
 

Functional Class:
Unknown  

Gene Ontology:

Pathway: pathway table

Comment:
TIGR ID: PG0650

Human Oral Microbiome Database:
View in HOMD Genome Viewer

Blast Summary:  PSI-Blast Search
No significant hits in gapped BLAST.

Top Blast Hits:  Updated monthly
Click here to view the entire PsiBlast results.
 gi|34540451|ref|NP_904930.1|  hypothetical protein PG0650 [P...   227   2e-58
 gi|154494845|ref|ZP_02033850.1|  hypothetical protein PARMER...    59   6e-08
 gi|150008471|ref|YP_001303214.1|  hypothetical protein BDI_1...    59   7e-08
 gi|126648085|ref|ZP_01720579.1|  hypothetical protein ALPR1_...    57   4e-07
 gi|53712490|ref|YP_098482.1|  hypothetical protein BF1198 [B...    55   2e-06
 gi|150006311|ref|YP_001301055.1|  hypothetical protein BVU_3...    55   2e-06
 gi|29349998|ref|NP_813501.1|  hypothetical protein BT_4590 [...    55   2e-06
 gi|149279324|ref|ZP_01885455.1|  hypothetical protein PBAL39...    54   3e-06
 gi|156107777|gb|EDO09522.1|  hypothetical protein BACOVA_053...    53   5e-06
 gi|153807760|ref|ZP_01960428.1|  hypothetical protein BACCAC...    52   7e-06


InterPro Summary:  InterProScan

No hits reported.

COGS Summary:  COGS Search
No hit to the COGs database.
Blocks Summary:  Blocks Search
No significant hit to the Blocks database.

 ProDom Summary:  Protein Domain Search
No significant hit to the ProDom database.

Paralogs:  Local Blast Search
No paralogs found in P. gingivalis.

Pfam Summary:  Pfam Search
No significant hits to the Pfam 11.0 database

 Structural Feature(s):
Feature Type  Start  Stop
coil-coil  
90  
117

Top PDB Hits:
No significant hits to the PDB database (E-value < E-10).

Gene Protein Sequence:
MTDKLPFALYSRCVKAGKRFYYIDAKRDSKGNDYLVITESNSAEEGSAMT
RHKVFLYREDFAKFTEAFLDVLKSFEKRSGVSGCEQAIGLSELEQSLSDM
TTGVEGLAESSDSILEEDEPLKIDFDF

Gene Nucleotide Sequence:  Sequence Viewer
ATGACCGACAAATTACCTTTTGCTCTCTATTCGCGGTGCGTCAAAGCCGG
CAAACGTTTCTACTACATTGATGCCAAACGCGATTCTAAAGGAAATGACT
ATCTGGTGATAACGGAAAGTAACAGTGCCGAAGAAGGTTCTGCAATGACG
CGGCATAAGGTTTTCCTCTATCGCGAAGATTTTGCCAAATTCACAGAAGC
CTTTTTGGACGTGCTAAAGTCTTTCGAAAAGAGGAGCGGAGTATCCGGAT
GCGAACAGGCGATCGGTTTGTCTGAATTGGAGCAGAGCCTTTCCGATATG
ACAACGGGAGTGGAGGGTTTAGCAGAGTCCTCCGATTCTATTTTGGAGGA
GGATGAACCGCTGAAAATAGATTTCGATTTT

Los Alamos National Laboratory • Est 1943

Operated by Los Alamos National Security, LLC for the U.S. Department of Energy's National Nuclear Security Administration
Inside | © Copyright 2006 LANS LLC All rights reserved | Disclaimer/Privacy