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Porphyromonas gingivalis Search Results

Record: 1 of 1  
MiniMap tRNA-Arg-1 IGR0572 IGR0570 IGR0569 IGR0568 IGR0573 IGR0571 IGR0567 PG0679.1 porT, - PG0677 wcfJ, - PG0676 atoC,ntrC,pilR, - PG0675 truA, - PG0681 prtQ, - PG0679 top1,topA, - PG0680 PG0679.1 porT, - PG0677 wcfJ, - PG0676 atoC,ntrC,pilR, - PG0675 truA, - PG0681 prtQ, - PG0679 top1,topA, - PG0680 porT, - PG0677 wcfJ, - PG0676 atoC,ntrC,pilR, - PG0675 PG0679.2 PG0679.1 PG0679.2 truA, - PG0681 prtQ, - PG0679 top1,topA, - PG0680 upp, - PG0678 upp, - PG0678


LANL Gene ID: PG0679

GenBank Locus Tag: PG0753

DNA Molecule Name:
1  

GenBank ID:
34540542

Gene Name:
prtQ  

Definition:
prtQ protein

Cellular Location:
Cytoplasm [Evidence]

Gene Start:
798442

Gene Stop:
800346

Gene Length:
1905

Molecular Weight*:
70442

pI*:
7.90

Net Charge*:
7.43

EC:
 

Functional Class:
Protein fate; Degradation of proteins, peptides, and glycopeptides  

Gene Ontology:
Biological process
  GO:0006508    proteolysis

Molecular function
  GO:0008233    peptidase activity


Pathway: pathway table

Primary Evidence:
Sato K, Sakai E, Veith PD, Shoji M, Kikuchi Y, Yukitake H, Ohara N, Naito M, Okamoto K, Reynolds EC, Nakayama K.
Identification of a New Membrane-associated Protein That Influences Transport/Maturation of Gingipains and Adhesins of Porphyromonas gingivalis.
J Biol Chem. 2005 Mar;280(10):8668-77.
PMID: 15634642

Comment:
TIGR ID: PG0753

Proteomic Data: Proteomic Data Search
TIGR Annotationprotease, GroupM (protein fate)
ORF #PG-PP/PG-PPC1PG-PP/PG-PPC2
Spectral CountPeptide IntensitySpectral CountPeptide Intensity
ProqValProqValProqValProqVal
TIGRPG07532.750.0156.880.0253.450.00166.880.025
LANLPG06796.72117.4110.92198.59
ConsensusSP1IP1SP2IP2

Human Oral Microbiome Database:
View in HOMD Genome Viewer

 Blast Summary:  PSI-Blast Search
This sequence corresponds to 4126503 in Genbank.

Its nearest neighbor in the NR database is 53711890 from Bacteroides fragilis YCH46.


 Top Blast Hits:  Updated monthly
Click here to view the entire PsiBlast results.
 gi|34540542|ref|NP_905021.1|  protease [Porphyromonas gingiv...  1283   0.0  
 gi|4126503|dbj|BAA36602.1|  prtQ [Porphyromonas gingivalis]      1258   0.0  
 gi|154493650|ref|ZP_02032970.1|  hypothetical protein PARMER...   609   e-172
 gi|150008124|ref|YP_001302867.1|  putative collagenase [Para...   582   e-164
 gi|53711890|ref|YP_097882.1|  putative collagenase [Bacteroi...   562   e-158
 gi|60680118|ref|YP_210262.1|  putative protease [Bacteroides...   561   e-158
 gi|150004586|ref|YP_001299330.1|  putative collagenase [Bact...   540   e-151
 gi|156109361|gb|EDO11106.1|  hypothetical protein BACOVA_030...   520   e-145
 gi|29347822|ref|NP_811325.1|  putative collagenase [Bacteroi...   517   e-145
 gi|153808352|ref|ZP_01961020.1|  hypothetical protein BACCAC...   513   e-143


InterPro Summary:  InterProScan

InterPro
IPR001539
Family
Peptidase U32
PD004398 [96-261]T 0.0 PD004398 Peptidase_U32 Peptidase_U32
PF01136 [80-310]T 2.1999990098072698E-63 PF01136 Peptidase_U32 Peptidase_U32
PS01276 [163-181]T 8.0E-5 PS01276 PEPTIDASE_U32 PEPTIDASE_U32
noIPR
unintegrated
unintegrated
SSF51412 [24-65]T 0.016 SSF51412 SSF51412 SSF51412


COGS Summary:  COGS Search
BeTs to 6 clades of COG0826
COG name: Protease related to collagenase
Functional Class: O
The phylogenetic pattern of COG0826 is -MT--q--EB-huj-------
Number of proteins in this genome belonging to this COG is 2
Blocks Summary:  Blocks Search
***** IPB001539 (Peptidase family U32) with a combined E-value of 8.6e-56.
    IPB001539A    11-36
    IPB001539B    162-199
    IPB001539C    240-265


 ProDom Summary:  Protein Domain Search
Residues 352-625 are 98% similar to a (PROTEIN PRTQ PUTATIVE PROTEASE) protein domain (PD191569 which is seen in Q9ZNF7_PORGI.

Residues 276-351 are 97% similar to a (PRTQ PROTEIN) protein domain (PD215572 which is seen in Q9ZNF7_PORGI.

Residues 10-275 are 99% similar to a (PROTEASE PROTEIN HYDROLASE PUTATIVE) protein domain (PD004398 which is seen in Q9ZNF7_PORGI.


Paralogs:  Local Blast Search
Residues 11-308 are 33% similar to PG1349, a collagenase.

Pfam Summary:  Pfam Search
Residues 80 to 310 (E-value = 1.9e-66) place PG0679 in the Peptidase_U32 family which is described as Peptidase family U32 (PF01136)

 Structural Feature(s):
Feature Type  Start  Stop
transmembrane  
160  
176

Top PDB Hits:
No significant hits to the PDB database (E-value < E-10).

Gene Protein Sequence:
MAKSFEPRLVELLAPAKDLATGQAAILHGADAVYIGAPSFGARASAGVSI
EDIGRLARFARLYRAKVYVALNTILYDDELPEAERIAWELYRAGADALIV
QDMSLCRLNLPPIALHASTQCDIRTVEKVRMFESLGYEQVVLARELCLPE
IRKIADSTSVVLEAFVHGALCVSLSGQCYLSEALTRRSANRGACAQLCRL
PYTMIDADGKVIRSNQHLLSLKDLNRSAELESMLEAGISSFKIEGRLKGI
SYVKNVTAHYRRLLDELISRYPERYCRASSGRCTFAFHPAPEKSFNRGFT
NLLLSGKRDTNTLITPESNKSKGAYIGCVTAVNRDKVSIRLRPDNTGAKP
SLANGDGLYLLHPDGNMSGTRINVVLPDGSIQVDNPAGIVSGTNVFRNYD
IRFEKALSQDNSAVRLIPVSLTLTDVPDGFSLSIEADCYPSAKATITAAH
EPATRFDEEQIRKNLTKLGGTPLEAVSVDIRLSHDYFIPLSLIGRLRRDA
VQSFIEKASSMPEREEKPVVQRRISPAASSLQEGEQSLSFLANVANKEAE
TFYRQMGYTSIAPAFEHSHPQGVPLMFSKHCLRYHLGYCPTLQHKESPYR
EPYYLIHGETRLRLRFDCQHCQMLVYHDSEGIKQT

Gene Nucleotide Sequence:  Sequence Viewer
ATGGCGAAAAGCTTTGAGCCACGGCTTGTAGAACTGCTTGCTCCGGCCAA
AGATCTTGCCACGGGTCAGGCGGCAATCCTCCACGGTGCCGATGCCGTGT
ATATCGGTGCTCCGTCTTTCGGTGCGCGAGCTTCGGCAGGAGTATCGATA
GAGGATATAGGCAGGCTGGCACGCTTCGCACGACTCTATCGTGCCAAAGT
ATATGTAGCACTCAATACGATCCTGTATGACGATGAGCTTCCCGAGGCAG
AACGCATCGCATGGGAGCTTTATCGGGCAGGAGCAGATGCCCTGATCGTA
CAGGACATGTCCCTATGTCGTCTGAACCTCCCACCTATAGCCCTCCATGC
CAGTACACAATGCGACATCCGCACTGTGGAGAAAGTCCGGATGTTCGAGT
CTCTGGGCTATGAGCAGGTGGTATTGGCCAGAGAGCTGTGCCTTCCCGAA
ATCCGCAAGATAGCCGACTCCACATCAGTGGTATTGGAAGCCTTTGTACA
TGGTGCACTCTGTGTGAGTCTGAGTGGGCAGTGCTACCTCTCCGAGGCAC
TAACCCGACGCAGTGCCAACCGAGGAGCTTGTGCCCAGCTCTGCAGACTG
CCCTATACGATGATCGATGCCGATGGAAAGGTAATCCGAAGCAATCAGCA
TCTTCTTTCCTTGAAAGACTTGAATCGCTCTGCCGAATTGGAGTCGATGC
TTGAGGCCGGCATCTCTTCATTCAAGATCGAAGGCCGACTCAAAGGTATC
TCCTATGTCAAAAATGTAACGGCACACTATCGCCGTCTTTTGGACGAACT
CATCAGCCGCTACCCCGAACGTTATTGTAGAGCTTCATCGGGACGCTGCA
CTTTCGCTTTCCATCCCGCCCCTGAAAAGAGCTTCAACCGTGGCTTCACT
AATCTCCTTCTAAGTGGTAAGCGCGACACAAATACCCTCATCACACCCGA
ATCGAACAAAAGCAAAGGTGCCTATATCGGCTGCGTGACAGCTGTAAACC
GCGACAAGGTCAGTATCCGGCTGCGACCCGATAATACGGGAGCCAAGCCC
TCCCTGGCCAATGGCGATGGCCTTTACCTCCTGCACCCCGACGGCAACAT
GAGCGGTACGCGCATCAATGTGGTTTTACCCGACGGCAGCATACAAGTGG
ACAATCCTGCCGGCATCGTATCGGGAACAAACGTATTCCGCAATTACGAC
ATCCGTTTCGAGAAAGCTCTCTCGCAAGACAACTCGGCCGTTCGCCTCAT
TCCCGTATCTCTTACCTTGACGGATGTTCCGGACGGCTTCTCTCTCTCGA
TAGAGGCCGACTGCTACCCATCTGCAAAGGCTACGATAACAGCTGCTCAC
GAGCCTGCCACACGGTTCGATGAAGAGCAGATCCGCAAGAATCTGACCAA
ATTAGGTGGTACACCGCTTGAAGCCGTATCAGTCGATATCCGGCTCAGTC
ACGACTATTTCATCCCGCTTTCTCTCATTGGCCGGTTAAGGAGAGATGCA
GTCCAATCCTTCATCGAGAAAGCCTCCTCTATGCCTGAACGTGAGGAAAA
ACCGGTCGTACAACGTCGCATTTCTCCTGCGGCGAGCAGCTTGCAGGAGG
GAGAGCAGAGCCTTTCCTTCTTAGCCAATGTGGCGAACAAGGAAGCAGAA
ACCTTCTATCGGCAAATGGGATATACATCTATCGCCCCCGCCTTCGAACA
CTCGCATCCCCAAGGCGTTCCGCTTATGTTTTCGAAGCACTGTCTCCGCT
ATCATTTGGGCTATTGCCCCACCCTCCAACACAAGGAATCGCCGTACAGA
GAACCGTACTACCTGATTCATGGCGAAACTCGTCTGCGACTCCGATTCGA
CTGCCAACACTGTCAAATGCTGGTCTATCACGACTCCGAAGGAATCAAGC
AGACC

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