Basic Search | Intermediate Search | Advanced Search | Gene Image Map |  Sequence Search |  Protein Motif Search |  Repeat Search |  DNA/RNA Motif Search |  Home

Porphyromonas gingivalis Search Results

Record: 1 of 1  
MiniMap IGR0624 IGR0631 IGR0623 IGR0627 IGR0632 IGR0621 IGR0625 IGR0630 IGR0629 IGR0626 IGR0628 IGR0622 PG0738 PG0734 PG0744 ISPg1, - PG0740 PG0734.1 PG0739 rteC, - PG0743 PG0737 PG0739.1 PG0741 PG0736 PG0735 PG0742 PG0738 PG0734 PG0744 ISPg1, - PG0740 PG0734.1 PG0739 rteC, - PG0743 PG0737 PG0739.1 PG0741 PG0736 PG0735 PG0742 Type: IS element, Name: ISPg1 - 2 PG0738 PG0734 PG0744 ISPg1, - PG0740 PG0734.1 PG0737 PG0739.1 PG0741 PG0736 PG0735 PG0742 PG0742.1 rteC, - PG0743 PG0739 PG0742.1


LANL Gene ID: PG0739.1

GenBank Locus Tag: PG0824

DNA Molecule Name:
1  

Genomic Island ID:
7

GenBank ID:
34540601

 Gene Name:


 Definition:
conserved hypothetical protein

 Cellular Location:
Inner membrane, Cytoplasm [Evidence]

 Gene Start:
881312

Gene Stop:
881989

Gene Length:
678

Molecular Weight*:
27131

pI*:


Net Charge*:


EC:
 

 Functional Class:
Unknown; Conserved hypothetical  

 Gene Ontology:

Pathway: pathway table

 Comment:
PG0739.1 is part of a long 9927 bp region containing 9 orfs which
is repeated with >99% similarity (9915 identical out of 9927) on the opposite strand. PG0738 to PG0744 have paralogs PG1269 to PG1263.

TIGR ID: PG0824

 Human Oral Microbiome Database:
View in HOMD Genome Viewer

 Blast Summary:  PSI-Blast Search
Gapped BLAST finds one significant hit; residues 8-170 are 42% similar to a hypothetical protein in Vibrio cholerae, gb|AAF96387.

 Top Blast Hits:  Updated monthly
Click here to view the entire PsiBlast results.
 gi|34540601|ref|NP_905080.1|  hypothetical protein PG0824 [P...   407   e-112
 gi|153803739|ref|ZP_01958325.1|  conserved hypothetical prot...   119   1e-25
 gi|15601244|ref|NP_232875.1|  hypothetical protein VCA0483 [...   117   5e-25
 gi|153803220|ref|ZP_01957806.1|  conserved hypothetical prot...   112   2e-23
 gi|157084884|gb|ABV14562.1|  hypothetical protein CKO_03482 ...   108   2e-22
 gi|46581244|ref|YP_012052.1|  hypothetical protein DVU2840 [...    99   2e-19
 gi|21674475|ref|NP_662540.1|  hypothetical protein CT1657 [C...    80   9e-14


InterPro Summary:  InterProScan

noIPR
unintegrated
unintegrated
tmhmm [51-71]? NA tmhmm transmembrane_regions[81-101]? NA tmhmm transmembrane_regions[154-176]? NA tmhmm transmembrane_regions[186-206]? NA tmhmm transmembrane_regions transmembrane_regions


COGS Summary:  COGS Search
No hit to the COGs database.
Blocks Summary:  Blocks Search
No significant hit to the Blocks database.

 ProDom Summary:  Protein Domain Search
No significant hit to the ProDom database.

Paralogs:  Local Blast Search
Paralogs include PG1267.1 with 100% similarity.

Pfam Summary:  Pfam Search
No significant hits to the Pfam 11.0 database

 Structural Feature(s):
Feature Type  Start  Stop
No predicted structural features.  
  
transmembrane  
54  
70
transmembrane  
84  
100
transmembrane  
154  
170
transmembrane  
187  
203

Top PDB Hits:
No significant hits to the PDB database (E-value < E-10).

Gene Protein Sequence:
LKLQFISQYDSKLRYICMIELENIKERKRRLAFEKAHEIRKFEIELYWKR
TTYFWAFIAFSFGAYIAIVSSESKEFTNRENYAFVITCIGFIFSLSWYLV
NRASKHWQTNWEVIIDDLEDEFTGDLMKRHIKNNNKWYELTLSYRYSVSR
INQIVSLFITIVWVILMCFSGYQILSISTFSLSGNWMFPIFFIVTIAFFV
ILVKWGKSEKPKEKVTLNRKSSKECC

Gene Nucleotide Sequence:  Sequence Viewer
TTGAAGTTACAATTTATCAGTCAATATGATTCTAAGTTAAGATATATATG
TATGATTGAATTAGAAAACATCAAAGAAAGGAAGAGAAGACTTGCTTTTG
AAAAAGCTCACGAGATTAGGAAGTTTGAAATTGAACTTTATTGGAAACGA
ACTACTTATTTTTGGGCATTTATAGCCTTTTCCTTTGGAGCGTATATTGC
TATTGTATCTTCCGAAAGCAAAGAGTTTACCAATAGAGAAAACTACGCTT
TCGTTATAACATGTATTGGCTTTATCTTTTCTCTAAGTTGGTATCTCGTA
AATAGAGCCAGCAAGCATTGGCAAACCAATTGGGAGGTAATTATAGATGA
TTTAGAAGATGAATTCACAGGAGATTTGATGAAAAGACATATAAAGAATA
ATAACAAATGGTATGAATTGACATTATCTTATAGATATTCTGTTTCAAGG
ATCAACCAGATTGTAAGCCTCTTTATTACCATTGTATGGGTTATCTTAAT
GTGTTTTTCTGGTTATCAAATTCTCAGTATTTCCACATTCTCTTTATCAG
GAAACTGGATGTTTCCTATATTCTTTATTGTCACAATCGCTTTCTTTGTT
ATTCTTGTAAAATGGGGAAAGTCTGAAAAGCCAAAGGAAAAGGTTACTCT
TAATCGAAAATCGTCCAAAGAATGTTGT

Los Alamos National Laboratory • Est 1943

Operated by Los Alamos National Security, LLC for the U.S. Department of Energy's National Nuclear Security Administration
Inside | © Copyright 2006 LANS LLC All rights reserved | Disclaimer/Privacy