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Porphyromonas gingivalis Search Results

Record: 1 of 1  
MiniMap IGR0638 IGR0637 IGR0631 IGR0634 IGR0632 IGR0630 IGR0636 IGR0633 IGR0635 IGR0639 PG0744.1 PG0747.1 PG0744 PG0746 PG0749 PG0748 PG0747 PG0745.1 rteC, - PG0743 PG0745 PG0742 PG0744.1 PG0747.1 PG0744 PG0746 PG0749 PG0748 PG0747 PG0745.1 rteC, - PG0743 PG0745 PG0742 Type: tandem, Name: tan6 - 214 PG0744.1 PG0747.1 PG0744 PG0746 PG0749 PG0748 PG0747 PG0745.1 PG0745 PG0742 PG0742.1 rteC, - PG0743 PG0742.1


LANL Gene ID: PG0746

GenBank Locus Tag: PG0832

DNA Molecule Name:
1  

Genomic Island ID:
7

GenBank ID:
34540607

 Gene Name:


 Definition:
conserved hypothetical protein

 Cellular Location:
Cytoplasm [Evidence]

 Gene Start:
889800

Gene Stop:
888775

Gene Length:
1026

Molecular Weight*:
38994

pI*:
5.40

Net Charge*:
-6.06

EC:
 

 Functional Class:
Unknown  

 Gene Ontology:

Pathway: pathway table

 Primary Evidence:
Zhang Y, Wang T, Chen W, Yilmaz O, Park Y, Jung IY, Hackett M, Lamont RJ.
Differential protein expression by Porphyromonas gingivalis in response to secreted epithelial cell components.
Proteomics. 2005 Jan;5(1):198-211.
PMID: 15619293

 Comment:
TIGR ID: PG0832

 Human Oral Microbiome Database:
View in HOMD Genome Viewer

 Blast Summary:  PSI-Blast Search
This sequence corresponds to 34396920 in Genbank.

Its nearest neighbor in the NR database is 48856002 from Cytophaga hutchinsonii.


 Top Blast Hits:  Updated monthly
Click here to view the entire PsiBlast results.
 gi|34540607|ref|NP_905086.1|  hypothetical protein PG0832 [P...   654   0.0  
 gi|124009710|ref|ZP_01694381.1|  conserved hypothetical prot...   156   2e-36
 gi|110636991|ref|YP_677198.1|  hypothetical protein CHU_0571...   149   3e-34
 gi|149278264|ref|ZP_01884402.1|  hypothetical protein PBAL39...   133   2e-29
 gi|16802615|ref|NP_464100.1|  hypothetical protein lmo0572 [...   128   5e-28
 gi|110637235|ref|YP_677442.1|  hypothetical protein CHU_0815...   128   7e-28
 gi|88713810|ref|ZP_01107891.1|  hypothetical protein FB2170_...   128   7e-28
 gi|153165870|ref|ZP_01926535.1|  conserved hypothetical prot...   126   2e-27
 gi|46906817|ref|YP_013206.1|  hypothetical protein LMOf2365_...   126   2e-27
 gi|16799656|ref|NP_469924.1|  hypothetical protein lin0581 [...   125   5e-27


InterPro Summary:  InterProScan

No hits reported.

COGS Summary:  COGS Search
No hit to the COGs database.
Blocks Summary:  Blocks Search
No significant hit to the Blocks database.

 ProDom Summary:  Protein Domain Search
No significant hit to the ProDom database.

Paralogs:  Local Blast Search
No paralogs found in P. gingivalis.

Pfam Summary:  Pfam Search
No significant hits to the Pfam 11.0 database

 Structural Feature(s):
Feature Type  Start  Stop
No predicted structural features.  
  

Top PDB Hits:
No significant hits to the PDB database (E-value < E-10).

Gene Protein Sequence:
MVNFKLGVPTIATVQKVGNKLKEEGIAFSSKADDMSFASGFISTLVKNTF
KFDVFCQFDSIESLDMNPSYRFVHKIFDDKDDIVKQSNNLARHLYDQSIH
PNIANGEFYIIYIDGCMLNNETVDALMLLKTEAKDSFLTVSYENGEYSIK
PQLGLSTKHLDKGCLIFNTKSEDGYLISIVETSTIRQDGRYWSNNFLYVK
DIITDFQYTENIANFCSFIVQKVSKEHPEKSLKLAKVSRRITQMLQDDGA
EINTNELISSLAIDDEVASLLPVCRKEYEDRTGKIPEIFKCTQNATKRKA
ITKANIIKIGTDFELKVLDASAFIEQGYDDEKKKNFIKLYYE

Gene Nucleotide Sequence:  Sequence Viewer
ATGGTAAACTTTAAATTAGGAGTCCCTACAATCGCCACAGTACAAAAGGT
TGGCAATAAGTTAAAAGAAGAAGGTATAGCATTTTCTTCTAAAGCAGATG
ATATGTCGTTTGCTTCTGGATTTATTTCAACATTAGTAAAAAACACATTC
AAGTTTGATGTTTTCTGTCAGTTTGATTCTATAGAGTCTTTAGACATGAA
TCCGTCATATAGATTTGTACACAAGATTTTTGATGACAAAGATGATATAG
TTAAACAATCTAACAATCTTGCTAGACACCTTTATGATCAAAGCATACAC
CCTAATATTGCTAATGGTGAGTTTTATATAATTTACATTGATGGTTGCAT
GCTTAACAATGAAACAGTTGATGCACTTATGCTTCTCAAAACAGAAGCTA
AAGATAGCTTTTTAACCGTATCCTATGAAAATGGAGAATATTCCATCAAA
CCTCAGTTAGGCTTGAGTACAAAACACTTGGATAAAGGTTGCTTAATTTT
TAATACAAAATCAGAGGACGGGTACTTGATTTCAATCGTGGAAACATCAA
CTATTCGTCAAGATGGTAGATATTGGTCGAATAACTTCCTATATGTTAAG
GATATTATCACCGATTTTCAATATACAGAAAACATAGCGAACTTTTGCTC
TTTTATAGTGCAAAAGGTAAGTAAAGAACATCCTGAAAAATCCTTGAAAT
TAGCGAAGGTGTCTCGAAGAATTACACAAATGTTGCAAGATGATGGTGCC
GAAATTAATACAAATGAATTGATTTCATCATTAGCAATAGATGACGAAGT
AGCATCCTTATTACCAGTGTGTCGAAAGGAATATGAAGATAGAACAGGAA
AAATACCAGAAATATTTAAATGCACACAAAATGCGACGAAAAGAAAAGCT
ATAACAAAGGCAAACATTATAAAAATAGGGACAGATTTTGAACTTAAGGT
GTTAGATGCGTCTGCCTTTATTGAACAAGGATATGATGATGAGAAGAAAA
AGAATTTTATTAAACTATACTATGAA

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