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Porphyromonas gingivalis Search Results

Record: 1 of 1  
MiniMap IGR0638 IGR0637 IGR0631 IGR0634 IGR0632 IGR0636 IGR0633 IGR0635 IGR0640 IGR0639 PG0744.1 PG0747.1 PG0744 PG0746 PG0749 PG0748 PG0747 PG0742.1 PG0745.1 rteC, - PG0743 PG0745 intN2, - PG0750 PG0744.1 PG0747.1 PG0744 PG0746 PG0749 PG0748 PG0747 PG0742.1 PG0745.1 rteC, - PG0743 PG0745 intN2, - PG0750 Type: tandem, Name: tan6 - 214 PG0744.1 PG0747.1 PG0744 PG0746 PG0749 PG0748 PG0747 PG0745.1 rteC, - PG0743 PG0745 intN2, - PG0750 PG0742.1


LANL Gene ID: PG0747

GenBank Locus Tag: PG0833

DNA Molecule Name:
1  

Genomic Island ID:
7

GenBank ID:
34540608

 Gene Name:


 Definition:
conserved hypothetical protein

 Cellular Location:
Cytoplasm [Evidence]

 Gene Start:
891665

Gene Stop:
889803

Gene Length:
1863

Molecular Weight*:
73081

pI*:
6.90

Net Charge*:
-1.20

EC:
 

 Functional Class:
Unknown; Conserved hypothetical  

 Gene Ontology:

Pathway: pathway table

 Comment:
TIGR ID: PG0833

 Proteomic Data: Proteomic Data Search
TIGR Annotationconserved hypothetical protein, GroupJ (hypothetical proteins-Conserved)
ORF #PG-PP/PG-PPC1PG-PP/PG-PPC2
Spectral CountPeptide IntensitySpectral CountPeptide Intensity
ProqValProqValProqValProqVal
TIGRPG0833-2.140.0084
LANLPG07470.230.03
ConsensusSP1IP1SP2IP2

Human Oral Microbiome Database:
View in HOMD Genome Viewer

 Blast Summary:  PSI-Blast Search
Using gapped BLAST residues 27-598 show 21% similarity to residues 23-630 of a yme gene in Agrobacterium tumefaciens, gb|AAB91579 and residues 1-601 show 23% similarity to residues 1-636 of a conserved hypothetical protein in Vibrio cholerae, gb|AAF93663.

 Top Blast Hits:  Updated monthly
Click here to view the entire PsiBlast results.
 gi|34540608|ref|NP_905087.1|  hypothetical protein PG0833 [P...  1162   0.0  
 gi|66047037|ref|YP_236878.1|  hypothetical protein Psyr_3809...   171   1e-40
 gi|153834110|ref|ZP_01986777.1|  conserved hypothetical prot...   171   2e-40
 gi|123441336|ref|YP_001005323.1|  AYP/GTP-binding protein [Y...   152   5e-35
 gi|118730259|ref|ZP_01578775.1|  hypothetical protein DaciDR...   144   2e-32
 gi|10955121|ref|NP_059777.1|  yme [Agrobacterium tumefaciens...   115   8e-24
 gi|119857938|ref|ZP_01639364.1|  conserved hypothetical prot...   112   7e-23
 gi|83943144|ref|ZP_00955604.1|  hypothetical protein EE36_13...   106   5e-21
 gi|21231052|ref|NP_636969.1|  plasmid-related protein [Xanth...   103   3e-20
 gi|116749454|ref|YP_846141.1|  hypothetical protein Sfum_202...    96   8e-18


InterPro Summary:  InterProScan

noIPR
unintegrated
unintegrated
SSF52540 [8-487]T 1.3E-5 SSF52540 SSF52540 SSF52540


COGS Summary:  COGS Search
No hit to the COGs database.
Blocks Summary:  Blocks Search
No significant hit to the Blocks database.

 ProDom Summary:  Protein Domain Search
Residues 27-254 are 21% similar to a (ORF13 PLASMID) protein domain (PD129830 which is seen in O52295_AGRTU.

Residues 381-598 are 23% similar to a (ORF12 PLASMID) protein domain (PD127887 which is seen in O52294_AGRTU.


Paralogs:  Local Blast Search
No paralogs found in P. gingivalis.

Pfam Summary:  Pfam Search
No significant hits to the Pfam 11.0 database

 Structural Feature(s):
Feature Type  Start  Stop
coil-coil  
190  
238
coil-coil  
263  
317
non-globular  
319  
420

Top PDB Hits:
No significant hits to the PDB database (E-value < E-10).

Gene Protein Sequence:
MNLYIASIKLWFKGFKENTERSITYSFEPNKINVITGDSSTGKSSILDII
DYLLLSDNPTIVENIINENVEFYGMNIFLEERSYILMRKAPHSGQGTQDV
YWKEQEEYPMPYIQTHSVGEMRTILTRMFYVPQHETKVGNRKYNMTFRHF
LPFNYLTEDIISSANTYFDTAFFINRSYDVFLDYALELVNGIQYHNANEI
KAKIEKAEIDLKQYQKKHQIAQENATKYKASLTSIYDDALSLNLIPADNF
FVRENAHEMLHYIKEALAAYNKLIKNDEDTKKLELLKKERYELNNKLSIY
NSLLAEMQKQKSSGKKIQDSLRPITFIKEHIDEVIISPETIELLHLLEKQ
LVQIKESRKEKPKLPHDFALRHEELKDKLKACESKLKELTILRKTIANPK
WLERAIGLKYRLENLKRPKEDTYQASTEQNMISLIESLKIEQKNMSLLPH
DVKEKLNSYINKYFHSINGIVDSYPDSTMRYDDDERRISLLNNGEDYPVR
NIGSKSNYMFLHLCFFLGLHESIMFHRSKHVGSFLFIDQPSMPYYADKGT
LDNDDKKQLIKAFRLLNEFMEEIIGNQNRSFQMILIEHADESYWKELEYF
HTTATFSKIAQGGLIPKYIYE

Gene Nucleotide Sequence:  Sequence Viewer
ATGAATCTATATATTGCTAGCATAAAGTTGTGGTTCAAGGGGTTTAAAGA
AAATACAGAAAGATCGATAACCTACTCGTTCGAACCAAATAAAATTAATG
TTATTACAGGAGACTCTTCCACAGGTAAATCTTCTATACTTGATATTATT
GATTACCTCCTATTGTCAGATAATCCCACTATAGTTGAGAATATTATTAA
TGAAAATGTTGAATTCTATGGAATGAATATATTTCTTGAAGAAAGAAGCT
ACATCCTAATGAGGAAGGCACCTCATTCAGGACAAGGTACGCAAGATGTG
TATTGGAAGGAGCAAGAGGAATATCCTATGCCATACATACAGACTCACTC
TGTGGGTGAGATGAGAACAATTCTGACAAGGATGTTTTATGTTCCTCAGC
ATGAAACTAAAGTTGGTAATCGGAAGTACAATATGACCTTCAGGCATTTT
TTGCCATTTAATTATCTAACAGAGGATATTATTTCATCAGCAAACACTTA
TTTTGATACGGCATTTTTTATTAATCGTAGTTATGATGTTTTCCTTGATT
ATGCATTAGAGCTTGTTAATGGTATTCAATATCATAATGCAAATGAGATT
AAAGCTAAAATTGAGAAAGCAGAAATTGATTTAAAGCAATATCAGAAAAA
ACATCAAATAGCTCAAGAAAATGCGACCAAATATAAAGCTAGTCTCACTT
CTATTTATGATGATGCCTTAAGTCTCAACCTTATTCCTGCAGATAATTTT
TTTGTTCGTGAGAATGCACATGAAATGTTACATTATATCAAAGAAGCTTT
AGCTGCCTATAATAAGCTAATAAAAAATGATGAGGATACAAAGAAATTGG
AATTGCTTAAAAAAGAGAGGTATGAATTAAATAATAAATTAAGTATCTAT
AACTCTTTACTAGCTGAAATGCAGAAGCAAAAGTCCTCAGGAAAAAAGAT
TCAAGATAGTTTGCGTCCTATTACCTTTATAAAGGAGCACATAGATGAAG
TCATAATTTCTCCTGAAACCATTGAACTTCTTCATTTGTTAGAGAAGCAA
CTAGTACAAATCAAGGAGTCCAGAAAGGAGAAGCCCAAATTACCTCATGA
TTTTGCTTTAAGGCACGAAGAATTAAAAGATAAGCTTAAGGCATGTGAGA
GTAAATTGAAAGAATTAACGATTCTTCGTAAAACCATAGCAAATCCCAAA
TGGCTAGAACGGGCCATAGGTCTTAAATACCGATTAGAAAATTTGAAAAG
ACCAAAAGAGGATACTTATCAGGCAAGTACAGAGCAAAATATGATTTCTT
TAATTGAGTCTTTGAAGATAGAGCAGAAGAATATGTCTTTATTGCCGCAT
GATGTAAAAGAGAAATTGAATAGTTATATAAATAAATATTTTCACTCAAT
CAATGGTATAGTGGATTCTTATCCAGATTCTACAATGCGTTATGATGATG
ATGAAAGAAGAATCTCTTTGCTAAATAATGGAGAAGATTATCCTGTTCGA
AATATTGGAAGTAAATCAAACTATATGTTCTTGCATTTGTGTTTCTTTTT
GGGGCTACATGAGTCTATAATGTTTCATCGGTCCAAACATGTTGGCTCAT
TTCTATTTATTGATCAGCCAAGTATGCCATATTATGCAGATAAGGGTACG
CTTGATAATGACGATAAGAAACAACTTATAAAGGCTTTCCGTCTGCTCAA
TGAATTTATGGAAGAGATTATTGGGAACCAAAATAGAAGTTTTCAGATGA
TATTAATCGAGCATGCGGATGAATCATATTGGAAGGAACTAGAGTATTTC
CATACAACAGCAACGTTCTCTAAAATTGCACAAGGAGGCTTAATTCCTAA
ATATATCTACGAA

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