Basic Search | Intermediate Search | Advanced Search | Gene Image Map |  Sequence Search |  Protein Motif Search |  Repeat Search |  DNA/RNA Motif Search |  Home

Porphyromonas gingivalis Search Results

Record: 1 of 1  
MiniMap IGR0638 IGR0637 IGR0642 IGR0641 IGR0636 IGR0635 IGR0640 IGR0639 PG0750.1 PG0747.1 PG0746 PG0749 PG0748 PG0747 PG0745.1 PG0745 PG0751 intN2, - PG0750 PG0750.1 PG0747.1 PG0746 PG0749 PG0748 PG0747 PG0745.1 PG0745 PG0751 intN2, - PG0750 Type: tandem, Name: tan6 - 214 PG0750.1 PG0747.1 PG0746 PG0749 PG0748 PG0747 PG0745 PG0751 intN2, - PG0750 PG0745.1


LANL Gene ID: PG0748

GenBank Locus Tag: PG0834

DNA Molecule Name:
1  

Genomic Island ID:
7

GenBank ID:
34540609

 Gene Name:


 Definition:
conserved hypothetical protein

 Cellular Location:
Cytoplasm [Evidence]

 Gene Start:
893352

Gene Stop:
892093

Gene Length:
1260

Molecular Weight*:
49259

pI*:
5.30

Net Charge*:
-9.60

EC:
 

 Functional Class:
Unknown  

 Gene Ontology:

Pathway: pathway table

 Primary Evidence:
Zhang Y, Wang T, Chen W, Yilmaz O, Park Y, Jung IY, Hackett M, Lamont RJ.
Differential protein expression by Porphyromonas gingivalis in response to secreted epithelial cell components.
Proteomics. 2005 Jan;5(1):198-211.
PMID: 15619293

 Comment:
TIGR ID: PG0834

 Human Oral Microbiome Database:
View in HOMD Genome Viewer

 Blast Summary:  PSI-Blast Search
This sequence corresponds to 34396922 in Genbank.

Its nearest neighbor in the NR database is 9654920 from Vibrio cholerae O1 biovar eltor str. N16961.


 Top Blast Hits:  Updated monthly
Click here to view the entire PsiBlast results.
 gi|34540609|ref|NP_905088.1|  hypothetical protein PG0834 [P...   778   0.0  
 gi|66047035|ref|YP_236876.1|  hypothetical protein Psyr_3807...   140   2e-31
 gi|153834105|ref|ZP_01986772.1|  conserved hypothetical prot...    96   3e-18
 gi|89897329|ref|YP_520816.1|  hypothetical protein DSY4583 [...    64   2e-08
 gi|153870054|ref|ZP_01999533.1|  conserved hypothetical prot...    58   1e-06
 gi|118730257|ref|ZP_01578773.1|  hypothetical protein DaciDR...    58   1e-06
 gi|85713745|ref|ZP_01044735.1|  hypothetical protein NB311A_...    56   4e-06


InterPro Summary:  InterProScan

No hits reported.

COGS Summary:  COGS Search
No hit to the COGs database.
Blocks Summary:  Blocks Search
No significant hit to the Blocks database.

 ProDom Summary:  Protein Domain Search
No significant hit to the ProDom database.

Paralogs:  Local Blast Search
No paralogs found in P. gingivalis.

Pfam Summary:  Pfam Search
No significant hits to the Pfam 11.0 database

 Structural Feature(s):
Feature Type  Start  Stop
No predicted structural features.  
  

Top PDB Hits:
No significant hits to the PDB database (E-value < E-10).

Gene Protein Sequence:
MSVITPSKEQSKRSAADIFVAFEYQWDYFVLMLLKENDDDATVSFELRDD
VDTQTEEGITLYQIKHSVRKSSKGETINLSNRDTDLWKTISIWMKYIDDE
PDILENTKFQLITNKAISKNKFVEAIEAFHNTHSVEDLKSAIVTIKESER
TEKSKIKSDNSVTNHLNVAQIITDLLNKTYLNEFCSRIYILKTSDVLEED
IKRIMSNRFGLNHNRIDWVYDQLMTKLRNDSIDNIKSGKSVTYNGAVFKE
RYQSILDIGRRKIYFKDCSINDFEGNFRELLFMKQLFSVYYVKENEVDRM
SRLTLSWLRFNNNFHELCNDNILINEDVNNLTKDVLSAWDNCYNKKYRKI
TEMSTDDELSEAGCCTIDDMREKLFSLAETPLGNQLSEGCIYYYSNSATE
IIPDLPLIGWHRDWKNKFKK

Gene Nucleotide Sequence:  Sequence Viewer
ATGAGCGTAATAACACCATCTAAAGAGCAAAGCAAACGTTCGGCTGCTGA
TATTTTTGTAGCCTTTGAATATCAATGGGATTACTTTGTGCTAATGCTAT
TAAAAGAAAACGATGATGATGCAACTGTTAGCTTTGAATTACGTGATGAT
GTTGATACACAAACGGAGGAGGGTATAACCCTATATCAAATAAAACATAG
TGTCCGTAAAAGTTCAAAAGGAGAAACGATTAATTTAAGCAATCGGGATA
CTGATTTGTGGAAAACTATTTCCATTTGGATGAAATATATTGATGATGAA
CCAGATATTTTAGAAAATACAAAGTTTCAATTGATAACAAACAAAGCAAT
CTCTAAGAATAAATTTGTTGAAGCAATTGAGGCTTTTCATAATACTCATT
CGGTCGAGGATTTAAAATCAGCCATTGTCACTATAAAAGAATCTGAAAGA
ACAGAAAAGAGTAAGATAAAATCTGATAACTCGGTAACTAACCACTTAAA
TGTGGCACAAATAATCACTGATCTGCTCAATAAGACTTATCTGAATGAGT
TTTGTTCTCGGATCTATATTTTGAAAACGTCAGATGTCTTGGAAGAAGAT
ATAAAACGAATCATGAGTAATCGCTTTGGCTTAAATCATAATCGTATTGA
TTGGGTATATGATCAACTTATGACAAAGTTAAGAAATGATTCCATTGATA
ATATAAAAAGTGGTAAGTCGGTAACATACAATGGTGCGGTTTTCAAAGAA
CGATATCAAAGCATACTTGATATTGGTAGAAGGAAAATTTATTTTAAGGA
TTGTTCTATTAATGATTTTGAGGGAAATTTTCGTGAATTATTGTTTATGA
AGCAACTTTTTTCAGTATATTACGTTAAGGAAAATGAAGTGGATAGAATG
TCTCGATTGACTTTAAGCTGGTTACGCTTTAATAATAATTTTCATGAACT
TTGCAATGATAATATTTTAATAAATGAAGATGTGAACAATTTGACCAAGG
ATGTACTGTCGGCGTGGGACAATTGTTATAATAAAAAGTACCGCAAAATT
ACAGAAATGTCTACAGATGATGAATTAAGTGAGGCTGGATGTTGTACTAT
TGATGATATGAGAGAAAAGTTGTTTTCTTTGGCTGAAACACCATTAGGAA
ATCAATTAAGTGAAGGGTGTATTTATTATTATTCCAATTCTGCAACAGAA
ATAATTCCAGATTTACCATTGATAGGTTGGCATCGTGATTGGAAAAATAA
ATTCAAGAAG

Los Alamos National Laboratory • Est 1943

Operated by Los Alamos National Security, LLC for the U.S. Department of Energy's National Nuclear Security Administration
Inside | © Copyright 2006 LANS LLC All rights reserved | Disclaimer/Privacy