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Porphyromonas gingivalis Search Results

Record: 1 of 1  
MiniMap IGR0721 IGR0720 IGR0723 IGR0715 IGR0717 IGR0722 IGR0719 IGR0718 IGR0716 PG0845 ISPg1, - PG0842 ISPg1, - PG0839 natA, - PG0844 natB, - PG0843 PG0838 ISPg5, - PG0840 amn, - PG0846 ISPg5, - PG0841 PG0847 PG0845 ISPg1, - PG0842 ISPg1, - PG0839 natA, - PG0844 natB, - PG0843 PG0838 ISPg5, - PG0840 amn, - PG0846 ISPg5, - PG0841 PG0847 Type: tandem, Name: tan7 - 215 Type: IS element, Name: ISPg1 - 2 Type: IS element, Name: ISPg1 fragment - 3 Type: IS element, Name: ISPg5 - 8 Type: tandem, Name: tan8 - 216 PG0845 ISPg1, - PG0842 ISPg1, - PG0839 natA, - PG0844 natB, - PG0843 PG0838 ISPg5, - PG0840 amn, - PG0846 ISPg5, - PG0841 PG0847


LANL Gene ID: PG0842

GenBank Locus Tag: PG0944

DNA Molecule Name:
1  

GenBank ID:


Gene Name:
ISPg1  

Definition:
ISPg1 fragment (IS1126-related transposase fragment)

Cellular Location:
Cytoplasm [Evidence]

Gene Start:
1004954

Gene Stop:
1004415

Gene Length:
540

Molecular Weight*:
20797

pI*:
9.20

Net Charge*:
4.10

EC:
 

Functional Class:
Transposon functions  

Gene Ontology:

Pathway: pathway table

Primary Evidence:
Hanley,S.A., Aduse-Opoku,J. and Curtis,M.A.
A 55-kilodalton immunodominant antigen of Porphyromonas gingivalis
W50 has arisen via horizontal gene transfer
Infect. Immun. 67 (3), 1157-1171 (1999)

Maley,J. and Roberts,I.S.
Characterisation of IS1126 from Porphyromonas gingivalis W83: a new member of the IS4 family of insertion sequence elements
Microbiol. Lett. 123 (1-2), 219-224 (1994)

Shibata,Y., Hayakawa,M., Takiguchi,H., Shiroza,T. and Abiko,Y.
Determination and characterization of the hemagglutinin-associated
short motifs found in Porphyromonas gingivalis multiple gene
products. J. Biol. Chem. 274 (8), 5012-5020 (1999)

Comment:
Member of the IS5 family of elements. Corresponds to the N-terminal portion of full-length ISPg1 elements such as PG1662.

TIGR ID: PG0944

Proteomic Data: Proteomic Data Search
TIGR AnnotationISPg1, transposase, truncation, GroupG (disrupted reading frame) ,GroupL (other categories)
ORF #PG-PP/PG-PPC1PG-PP/PG-PPC2
Spectral CountPeptide IntensitySpectral CountPeptide Intensity
ProqValProqValProqValProqVal
TIGRPG0944-1.560.072-3.230.00054-3.230.00054
LANLPG08420.340.11
ConsensusSP1IP1SP2IP2

Human Oral Microbiome Database:
View in HOMD Genome Viewer

 Blast Summary:  PSI-Blast Search
Several hits in gapped BLAST to previously sequenced IS1126-related transposases from P.gingivalis. Residues 10-158 are 33% similar to TnpA3 from Pseudomonas stutzeri (AF039534).

 Top Blast Hits:  Updated monthly
Click here to view the entire PsiBlast results.
 gi|4001716|dbj|BAA35090.1|  ORF7 [Porphyromonas gingivalis]       324   1e-87
 gi|34540041|ref|NP_904520.1|  ISPg1, transposase [Porphyromo...   323   2e-87
 gi|34540279|ref|NP_904758.1|  ISPg1, transposase [Porphyromo...   323   2e-87
 gi|3901097|emb|CAA10225.1|  transposase [Porphyromonas gingi...   318   1e-85
 gi|34541013|ref|NP_905492.1|  ISPg1, transposase, internal d...   308   7e-83
 gi|3869078|dbj|BAA34342.1|  Insertion sequence IS1126-like g...   305   1e-81
 gi|1361314|pir||S57895  hypothetical protein 1 - Porphyromon...   240   3e-62
 gi|91218509|ref|ZP_01255448.1|  ISPg1, transposase [Psychrof...   155   7e-37
 gi|91216745|ref|ZP_01253710.1|  ISPg1, transposase [Psychrof...   154   3e-36
 gi|39934368|ref|NP_946644.1|  putative IS5 transposase [Rhod...   101   2e-20


InterPro Summary:  InterProScan

No hits reported.

COGS Summary:  COGS Search
No hit to the COGs database.
Blocks Summary:  Blocks Search
No significant hit to the Blocks database.

 ProDom Summary:  Protein Domain Search
Residues 12-109 are 97% similar to a (TRANSPOSASE PROTEIN INSERTION ELEMENT) protein domain (PD007264 which is seen in Q9ZAD0_PORGI.

Residues 110-156 are identical to a (TRANSPOSASE ORF7 INSERTION SEQUENCE IS1126-LIKE GENE) protein domain (PD187846 which is seen in Q9ZA61_PORGI.


Paralogs:  Local Blast Search
PG0842 is partially similar to PG0732, PG1662, PG1422, PG1267, PG1062, PG1050, PG0918, PG0740, PG0499, PG0420, PG0169, PG1159, PG1607, PG0884, PG0731, PG1895, PG1919, PG1798, PG1755, PG1665, PG1230, PG1215, PG1184, PG1087, PG0839, PG0763, PG0756, PG0689, PG0686, PG0044, all ISPg1-related transposase sequences. Specifically PG0842 corresponds to the N-terminal portion of full-length ISPg1 elements such as PG1662.

Pfam Summary:  Pfam Search
No significant hits to the Pfam 11.0 database

 Structural Feature(s):
Feature Type  Start  Stop
No predicted structural features.  
  
transmembrane  
57  
73

Top PDB Hits:
No significant hits to the PDB database (E-value < E-10).

Gene Protein Sequence:
MAYQSKNTDEHVTFADALLSKRYRKAQNDFLNQVDRLIDWRPIRTLINKK
YTKRQNAIGAPAYDVILLFKMLLPKTWYNLSDCALEERINDSITFSRFLG
LKMEEVSPDHSTISRFRSALTELGLMDKLLAQFNKQLSRHHISVREGVLV
DASLVETPHKPNETIAQIQLTNTEQVSLCF

Gene Nucleotide Sequence:  Sequence Viewer
ATGGCATACCAATCCAAGAATACCGATGAGCATGTAACATTTGCAGACGC
ACTCCTTTCAAAGCGTTATCGCAAAGCACAAAACGACTTCCTCAATCAGG
TTGACAGGCTTATCGATTGGCGTCCGATCAGGACGCTGATCAACAAGAAA
TACACCAAGCGACAAAATGCCATCGGCGCCCCGGCTTATGACGTGATTCT
CTTATTCAAGATGTTGCTTCCGAAGACATGGTACAACCTCAGTGATTGTG
CTTTGGAGGAGCGCATCAATGATTCAATCACCTTTTCCCGATTCTTGGGG
CTGAAGATGGAAGAGGTATCTCCCGACCACAGCACCATCAGTCGATTTCG
TTCGGCACTGACAGAGTTGGGTCTCATGGACAAACTGTTGGCGCAGTTTA
ACAAACAACTTTCCCGCCATCACATTTCGGTAAGGGAAGGGGTGCTTGTC
GATGCAAGCCTTGTGGAGACGCCGCACAAACCCAACGAGACCATTGCACA
AATCCAGCTCACCAATACCGAACAAGTTTCCTTGTGTTTT

Los Alamos National Laboratory • Est 1943

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