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Porphyromonas gingivalis Search Results

Record: 1 of 1  
MiniMap tRNA-Leu-3 IGR0737 IGR0732 IGR0733 IGR0734 IGR0736 IGR0735 IGR0731 IGR0739 IGR0738 PG0863 PG0860 PG0865 pss, - PG0864 PG0859 mrp, - PG0858 queA, - PG0867 rbn, - PG0857 proS, - PG0861 PG0862 PG0857.1 mrr, - PG0866 PG0863 PG0860 PG0865 pss, - PG0864 PG0859 mrp, - PG0858 queA, - PG0867 rbn, - PG0857 proS, - PG0861 PG0862 PG0857.1 mrr, - PG0866 PG0863 PG0865 pss, - PG0864 PG0859 mrp, - PG0858 queA, - PG0867 rbn, - PG0857 proS, - PG0861 PG0860 PG0862 PG0857.1 mrr, - PG0866


LANL Gene ID: PG0862

GenBank Locus Tag:

DNA Molecule Name:
1  

GenBank ID:


Gene Name:


Definition:
hypothetical protein

Cellular Location:
Cytoplasm [Evidence]

Gene Start:
1023993

Gene Stop:
1024289

Gene Length:
297

Molecular Weight*:
11629

pI*:
9.40

Net Charge*:
3.13

EC:
 

Functional Class:
Unknown; Hypothetical  

Gene Ontology:

Pathway: pathway table

Comment:
NO TIGR ID corresponds to this gene.

Human Oral Microbiome Database:
View in HOMD Genome Viewer

Blast Summary:  PSI-Blast Search
No hits in gapped BLAST.

Top Blast Hits:  Updated monthly
Click here to view the entire PsiBlast results.


***** No hits found ******




InterPro Summary:  InterProScan
























noIPR
unintegrated		






unintegrated





signalp
[1-20]? NA signalp signal-peptide
signal-peptide




tmhmm
[60-80]? NA tmhmm transmembrane_regions
transmembrane_regions












COGS Summary:  COGS Search
No hit to the COGs database.


Blocks Summary:  Blocks Search
No significant hit to the Blocks database.


ProDom Summary:  Protein Domain Search
No significant hit to the ProDom database.

Paralogs:  Local Blast Search
No paralogs found in P. gingivalis.

Pfam Summary:  Pfam Search
No significant hits to the Pfam 11.0 database


Structural Feature(s):
Feature Type  Start  Stop
transmembrane  
60  
82
transmembrane  
64  
80

Top PDB Hits:
-52% similar to PDB:1BY3  FHUA FROM E. COLI (E_value = );
-52% similar to PDB:1BY5  FHUA FROM E. COLI, WITH ITS LIGAND FERRICHROME (E_value = );
-52% similar to PDB:1CHC  STRUCTURE OF THE C3HC4 DOMAIN BY 1H-NUCLEAR MAGNETIC RESONANCE SPECTROSCOPY; A NEW STRUCTURAL CLASS OF ZINC-FINGER (E_value = );

Gene Protein Sequence:

VRIAKWKWANLFIFCRQVFTRWIGPDEVCPLYFLSDPVSSGQGDIGAKDP
SLLNIWIHPVPASALVLYVFEVYVFSLVFVKFSLFKFVEFDFFTRRRVF

Gene Nucleotide Sequence:  Sequence Viewer

GTGCGGATTGCCAAATGGAAGTGGGCAAATCTTTTTATTTTCTGTAGGCA
GGTATTTACTCGATGGATTGGGCCGGATGAAGTCTGCCCTCTTTATTTTT
TGTCGGATCCGGTATCAAGCGGACAGGGTGATATCGGAGCAAAGGATCCG
AGTCTGCTGAATATATGGATCCATCCGGTTCCTGCATCAGCTCTTGTCCT
TTATGTCTTCGAAGTCTACGTATTCTCCTTGGTCTTTGTCAAATTTTCGC
TTTTCAAGTTCGTCGAGTTCGACTTTTTCACCCGGAGAAGGGTTTTT








    

      
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