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Porphyromonas gingivalis Search Results

Record: 1 of 1  
MiniMap tRNA-Phe IGR0750 IGR0753.1 IGR0752 IGR0754 IGR0749 IGR0753 IGR0751 IGR0748 rl35, - PG0886.1 PG0879 rl20, - PG0886 ISPg1, - PG0883 ISPg1, - PG0884 infC, - PG0887 PG0881 thrS, - PG0888 PG0880 PG0885 PG0882 PG0878 rl35, - PG0886.1 PG0879 rl20, - PG0886 ISPg1, - PG0883 ISPg1, - PG0884 infC, - PG0887 PG0881 thrS, - PG0888 PG0880 PG0885 PG0882 PG0878 Type: IS element, Name: ISPg1 fragment - 3 Type: tandem, Name: tan43 - 251 PG0879 rl20, - PG0886 ISPg1, - PG0883 ISPg1, - PG0884 infC, - PG0887 PG0881 thrS, - PG0888 rl35, - PG0886.1 PG0885 PG0882 PG0878 PG0879.1 PG0880 PG0879.1


LANL Gene ID: PG0881

GenBank Locus Tag:

DNA Molecule Name:
1  

GenBank ID:


Gene Name:


Definition:
hypothetical protein

Cellular Location:
Inner membrane, Cytoplasm [Evidence]

Gene Start:
1048809

Gene Stop:
1047997

Gene Length:
813

Molecular Weight*:
70674

pI*:
10.30

Net Charge*:
13.56

EC:
 

Functional Class:
Unknown; Hypothetical  

Gene Ontology:

Pathway: pathway table

Comment:
NO TIGR ID corresponds to this gene.

Human Oral Microbiome Database:
View in HOMD Genome Viewer

Blast Summary:  PSI-Blast Search
No hit found in gapped BLAST.

Top Blast Hits:  Updated monthly
Click here to view the entire PsiBlast results.


***** No hits found ******




InterPro Summary:  InterProScan
























noIPR
unintegrated		






unintegrated





signalp
[1-50]? NA signalp signal-peptide
signal-peptide




tmhmm
[19-41]? NA tmhmm transmembrane_regions[219-239]? NA tmhmm transmembrane_regions
transmembrane_regions












COGS Summary:  COGS Search
No hit to the COGs database.


Blocks Summary:  Blocks Search
No significant hit to the Blocks database.


ProDom Summary:  Protein Domain Search
No significant hit to the ProDom database.

Paralogs:  Local Blast Search
No paralogs found in P. gingivalis.

Pfam Summary:  Pfam Search
No significant hits to the Pfam 11.0 database


Structural Feature(s):
Feature Type  Start  Stop
cleavable signal  
1  
44
transmembrane  
16  
37
transmembrane  
42  
66
transmembrane  
100  
116
transmembrane  
104  
122
transmembrane  
186  
203
transmembrane  
223  
239
transmembrane  
224  
241

Top PDB Hits:
No significant hits to the PDB database (E-value < E-10).

Gene Protein Sequence:

LFAGFFHLSAELFPLLAPFLILLFLSLHILLVVFLLLLAIFSHSLRVVRL
QNIPLLAEITRTAIGINHLIELLSRECPFHDKCTYFLRILRVQDKCPERI
LLALLGIETDSLVAILHRHQLLIVLTAPAHDRGKGSANQSRGRRTIHIGR
KNVHPIQQRRIDADIRLPFQILRSHFEHRLGEIDGFDAVIFPKFFHFYTL
SIGYRGQHTYSHDQGYNHFCFHLYSPFLFYCVSFIFLFGHSRFRIQGFLF
PSEHFHKLPLRISPAIETILQ

Gene Nucleotide Sequence:  Sequence Viewer

TTGTTTGCGGGCTTTTTCCATCTCTCGGCGGAGCTTTTCCCGCTCCTTGC
GCCATTCTTGATTTTGCTTTTTCTGAGCCTTCATATACTCTTGGTAGTAT
TTCTCCTTTTGCTTGCGATATTTTCGCATAGCCTCCGAGTTGTCAGGCTT
CAAAACATTCCACTCCTTGCGGAAATAACGCGAACGGCCATTGGGATAAA
TCATTTGATTGAGCTGCTCTCGCGTGAATGTCCCTTCCATGACAAGTGCA
CGTATTTCCTCCGCATCCTCCGTGTACAGGACAAGTGTCCGGAACGTATT
CTTCTTGCCCTTCTCGGCATAGAAACCGATTCGCTCGTTGCCATCCTGCA
CAGACATCAGCTCCTCATAGTCCTTACGGCTCCCGCCCATGATCGGGGAA
AAGGTTCTGCGAATCAGAGCCGCGGACGAAGAACGATTCATATCGGTCGA
AAAAATGTACATCCCATCCAGCAACGACGTATTGATGCTGATATCCGTCT
TCCGTTTCAGATACTTCGAAGCCATTTTGAGCATCGGCTTGGAGAGATAG
ACGGATTCGATGCCGTTATCTTTCCTAAGTTCTTCCACTTTTATACGCTG
AGCATCGGyTACCGGGGACAACATACATATAGCCACGATCAGGGCTACAA
TCATTTTTGCTTTCATCTCTATTCTCCTTTTTTATTCTATTGTGTTTCTT
TCATATTCCTCTTCGGACATAGCCGTTTCCGCATACAAGGCTTCCTCTTC
CCATCCGAGCATTTCCACAAACTCCCCCTCCGCATCAGCCCCGCGATCGA
GACAATACTCCAA








    

      
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