LANL Gene ID: PG0884
GenBank Locus Tag:
DNA Molecule Name:
1
GenBank ID:
Gene Name:
ISPg1
Definition:
ISPg1 fragment
Cellular Location:
Cytoplasm [Evidence]
Gene Start:
1050259
Gene Stop:
1049762
Gene Length:
498
Molecular Weight*:
18809
pI*:
5.10
Net Charge*:
-4.32
EC:
Functional Class:
Transposon functions
Gene Ontology:
Pathway: pathway table
Primary Evidence:
Hanley,S.A., Aduse-Opoku,J. and Curtis,M.A.
A 55-kilodalton immunodominant antigen of Porphyromonas gingivalis
W50 has arisen via horizontal gene transfer
Infect. Immun. 67 (3), 1157-1171 (1999)
Maley,J. and Roberts,I.S.
Characterisation of IS1126 from Porphyromonas gingivalis W83: a new member of the IS4 family of insertion sequence elements
Microbiol. Lett. 123 (1-2), 219-224 (1994)
Shibata,Y., Hayakawa,M., Takiguchi,H., Shiroza,T. and Abiko,Y.
Determination and characterization of the hemagglutinin-associated
short motifs found in Porphyromonas gingivalis multiple gene
products. J. Biol. Chem. 274 (8), 5012-5020 (1999)
Secondary Evidence:
Knight,A.I., Ni,H., Cartwright,K.A. and McFadden,J.J.
Identification and characterization of a novel insertion sequence, IS1106, downstream of the porA gene in B15 Neisseria meningitidis.
Mol. Microbiol. 6 (11), 1565-1573 (1992)
Comment:
Member of the IS5 family of elements. PG0883 and PG0884 could together constitute a full-length ISPg1 element such as PG1662.
NO TIGR ID corresponds to this gene.
Human Oral Microbiome Database:
View in HOMD Genome Viewer
Blast Summary: PSI-Blast Search
PG0884 is similar to portions of the previously sequenced ISPg1 transposases in GenBANK, AB015879, AJ130872, AB019363. REsidues 34-134 are 39% similar to (X76949) of ORF1169a in Bacteroides fragilis.
Top Blast Hits: Updated monthly
Click here to view the entire PsiBlast results.
InterPro Summary: InterProScan
No hits reported.
COGS Summary: COGS Search
No hit to the COGs database.
Blocks Summary: Blocks Search
No significant hit to the Blocks database.
ProDom Summary: Protein Domain Search
Residues 2-84 are 63% similar to a (TRANSPOSASE PROTEIN INSERTION ELEMENT) protein domain (PD007264 which is seen in Q9ZNB4_PORGI.
Residues 85-132 are 62% similar to a (TRANSPOSASE ORF7 INSERTION SEQUENCE IS1126-LIKE GENE) protein domain (PD187846 which is seen in Q9ZA61_PORGI.
Paralogs: Local Blast Search
PG0884 is virtually identical to PG0731 and similar to N-terminal regions of PG1662, PG1422, PG1267, PG1062, PG1050, PG0918, PG0740, PG0169, PG1099, PG0499, PG0420, PG0732, PG0842, PG1159, PG1607, PG1919, PG1798, PG1755, PG1665, PG1230, PG1215, PG1184, PG1087, PG0839, PG0763, PG0756, PG0689, PG0686, PG1895, PG0044, PG1608, all ISPg1-related transposases or fragments.
Pfam Summary: Pfam Search
No significant hits to the Pfam 11.0 database
Structural Feature(s):
| Feature Type | Start | Stop |
| No predicted structural features. |
Top PDB Hits:
No significant hits to the PDB database (E-value < E-10).
Gene Protein Sequence:
MKHSFLRQINAGFDWRGIRTLLNKKYTKTQNAIGNPAYDALLMFKILLLE
TWYGLSDYEVEECINDSLLFSEFLGLDLGFPSPDHSTISRFRSELTRLGI
MDKLLRELNKQFKKHGISRIDQGAIVDASIVDSPYAPDGNVVIEVAEDRE
DTRSEEARTQPGGLSL
Gene Nucleotide Sequence: Sequence Viewer
ATGAAACACTCTTTCCTGCGTCAAATCAATGCCGGTTTTGATTGGCGTGG
TATTCGCACACTGCTGAACAAGAAATACACCAAGACACAGAATGCCATAG
GTAACCCTGCCTACGATGCGCTGTTGATGTTCAAGATTCTACTCTTGGAG
ACTTGGTATGGTTTGAGTGACTACGAGGTTGAGGAGTGCATCAACGACTC
CTTGCTTTTCAGTGAATTCCTTGGCTTGGACCTCGGCTTCCCTTCCCCCG
ACCATAGCACGATCAGTCGTTTCCGTAGTGAACTCACTCGCTTGGGGATT
ATGGATAAACTCCTTCGGGAGCTGAACAAGCAGTTCAAGAAGCACGGCAT
CAGCCGTATCGATCAAGGCGCCATCGTTGATGCGAGCATTGTGGATAGTC
CTTACGCCCCTGATGGCAACGTGGTCATAGAAGTGGCTGAAGATCGAGAG
GATACTCGTTCGGAGGAAGCTCGTACACAGCCAGGAGGCTTATCATTG