LANL Gene ID: PG0889
GenBank Locus Tag: PG0993
DNA Molecule Name:
1
GenBank ID:
Gene Name:
ISPg2
Definition:
ISPg2 fragment (PGIS2-related fragment)
Cellular Location:
Cytoplasm [Evidence]
Gene Start:
1054882
Gene Stop:
1054580
Gene Length:
303
Molecular Weight*:
12028
pI*:
6.50
Net Charge*:
-1.10
EC:
Functional Class:
Transposon functions
Gene Ontology:
Pathway: pathway table
Comment:
Member of IS5 family of elements. Corresponds to the N-terminal domains of full-length ISPg2 elements such as PG1522.
TIGR ID: PG0993
Human Oral Microbiome Database:
View in HOMD Genome Viewer
Blast Summary: PSI-Blast Search
This sequence is 43% similar to a previously sequenced ISPg2 transposase of P.gingivalis in Genbank, AAC45368.
Few significant hits in gapped BLAST, e.g.; residues 1-99 are 24% similar to gb|AAC73800.1| putative DNA ligase of Escherichia coli K12, residues 2-98 are 25% similar to emb|CAB82577.1| hypothetical protein of Klebsiella pneumoniae.
Top Blast Hits: Updated monthly
Click here to view the entire PsiBlast results.
InterPro Summary: InterProScan
| noIPR unintegrated |
| |||||||
![[21-41]? NA tmhmm transmembrane_regions](http://www.ebi.ac.uk/InterProScan/images/T.gif){kind=small}
COGS Summary: COGS Search
No hit to the COGs database.
Blocks Summary: Blocks Search
No significant hit to the Blocks database.
ProDom Summary: Protein Domain Search
Residues 3-98 are 43% similar to a (PUTATIVE TRANSPOSASE) protein domain (PD103322 which is seen in P95492_PORGI.
Paralogs: Local Blast Search
PG0889 is equivalent to the N-terminal domains of full-length ISPg2 elements such as PG1522. See also PG1905, PG1522, PG1185, PG0775, PG0249, PG1058, all predicted ISPG2 sequences or sequence fragments.
Pfam Summary: Pfam Search
No significant hits to the Pfam 11.0 database
Structural Feature(s):
| Feature Type | Start | Stop |
| No predicted structural features. | ||
| transmembrane |
Top PDB Hits:
-47% similar to PDB:2GMH Structure of Porcine Electron Transfer Flavoprotein-Ubiquinone Oxidoreductase in Complexed with Ubiquinone (E_value = );
-47% similar to PDB:2GMJ Structure of Porcine Electron Transfer Flavoprotein-Ubiquinone Oxidoreductase (E_value = );
-42% similar to PDB:2NR8 Crystal structure of the human KIF9 motor domain in complex with ADP (E_value = );
-55% similar to PDB:1BVZ ALPHA-AMYLASE II (TVAII) FROM THERMOACTINOMYCES VULGARIS R-47 (E_value = );
-55% similar to PDB:1G1Y CRYSTAL STRUCTURE OF ALPHA-AMYLASE II (TVAII) FROM THERMOACTINOMYCES VULGARIS R-47 AND BETA-CYCLODEXTRIN COMPLEX (E_value = );
Gene Protein Sequence:
MENIFQILSTVPDHRRGNHLIYPIDYLLLISFSGIMSVFTTWSDFELYAQ
LHEEDLKMLYKRLAKRELMNYTPSHDTFSYCFRGLDPKAFQEAFKSWLLT
V
Gene Nucleotide Sequence: Sequence Viewer
ATGGAAAATATCTTTCAAATTCTTTCAACCGTCCCGGATCATCGTCGAGG
CAATCATTTGATCTATCCCATTGATTATCTTTTACTTATTTCATTCTCCG
GGATTATGTCCGTTTTTACCACGTGGAGCGACTTCGAGCTCTATGCCCAA
CTACATGAAGAAGACCTTAAAATGCTGTATAAAAGATTGGCAAAGAGAGA
GCTGATGAATTATACGCCCTCACACGATACTTTCAGTTACTGTTTTCGCG
GTTTGGATCCGAAGGCTTTTCAAGAGGCCTTCAAGTCTTGGCTGCTCACT
GTT