Basic Search | Intermediate Search | Advanced Search | Gene Image Map |  Sequence Search |  Protein Motif Search |  Repeat Search |  DNA/RNA Motif Search |  Home

Porphyromonas gingivalis Search Results

Record: 1 of 1  
MiniMap IGR0845 IGR0848 IGR0844 IGR0851 IGR0852 IGR0847 IGR0846 IGR0849 IGR0850 PG0993 PG0987 PG0986.1 PG0990 PG0991 bipH, - PG0994 bmpH,mob, - PG0988 panD, - PG0995 PG0989 PG0997 ffh, - PG0996 PG0986 PG0993 PG0987 PG0986.1 PG0990 PG0991 bipH, - PG0994 bmpH,mob, - PG0988 panD, - PG0995 PG0989 PG0997 ffh, - PG0996 PG0986 Type: tandem, Name: tan9 - 217 PG0993 PG0986.1 PG0990 PG0991 bipH, - PG0994 bmpH,mob, - PG0988 PG0987 panD, - PG0995 PG0989 PG0997 ffh, - PG0996 PG0986


LANL Gene ID: PG0991

GenBank Locus Tag:

DNA Molecule Name:
1  

Genomic Island ID:
10

GenBank ID:


 Gene Name:


 Definition:
conserved hypothetical protein

 Cellular Location:
Cytoplasm [Evidence]

 Gene Start:
1184909

Gene Stop:
1184211

Gene Length:
699

Molecular Weight*:
26815

pI*:
8.60

Net Charge*:
3.83

EC:
 

 Functional Class:
Unknown; Conserved hypothetical  

 Gene Ontology:

Pathway: pathway table

 Secondary Evidence:
Shoemaker,N.B., Wang,G.R. and Salyers,A.A. 2000. Multiple gene products and sequences required for excision of the mobilizable integrated Bacteroides element NBU1. J. Bacteriol. 182 (4): 928-936. PubMed: 10648516.

 Comment:
NO TIGR ID corresponds to this gene.

 Human Oral Microbiome Database:
View in HOMD Genome Viewer

 Blast Summary:  PSI-Blast Search
One significant hit to unknown protein in gapped BLAST; e.g. residues 69-233 are 75% similar to gb|AAF74441.1|AF238307_5 unknown protein of Bacteroides uniformis.

 Top Blast Hits:  Updated monthly
Click here to view the entire PsiBlast results.
 gi|150010082|ref|YP_001304825.1|  hypothetical protein BDI_3...   286   6e-76
 gi|150008750|ref|YP_001303493.1|  hypothetical protein BDI_2...   280   4e-74
 gi|156862587|gb|EDO56018.1|  hypothetical protein BACUNI_003...   270   4e-71
 gi|54307149|ref|YP_133703.1|  hypothetical protein NBU1_09 [...   270   4e-71
 gi|150006226|ref|YP_001300970.1|  hypothetical protein BVU_3...   254   3e-66
 gi|154490806|ref|ZP_02030747.1|  hypothetical protein PARMER...   254   3e-66
 gi|86141542|ref|ZP_01060088.1|  hypothetical protein MED217_...   176   9e-43


InterPro Summary:  InterProScan

noIPR
unintegrated
unintegrated
signalp [1-17]? NA signalp signal-peptide signal-peptide


COGS Summary:  COGS Search
No hit to the COGs database.
Blocks Summary:  Blocks Search
No significant hit to the Blocks database.

 ProDom Summary:  Protein Domain Search
No significant hit to the ProDom database.

Paralogs:  Local Blast Search
No paralogs found in P. gingivalis.

Pfam Summary:  Pfam Search
No significant hits to the Pfam 11.0 database

 Structural Feature(s):
Feature Type  Start  Stop
uncleavable signal  
1  
33
transmembrane  
4  
20

Top PDB Hits:
No significant hits to the PDB database (E-value < E-10).

Gene Protein Sequence:
LLRISLFSSVLIPFCFSFTVPHHSSQVGFGTMSVTLHDTYINHLSKKEMS
KKNNDELLEDKPEKRERRIEDGAFVRVGTTLYKMVNLPLVGGGFVKKRIV
WNNETLRQDYGRDYLATVPKYDGFCTVPDHVNYQPVIGSFLNLYEPTGHQ
PKKGAFPHIETLVRHIFGEQYELGMDYLQLLYLRPIQKLPILLLVSEERN
TGKSTFLNFLKALFGSNVTFNTNEDFRSQFNSD

Gene Nucleotide Sequence:  Sequence Viewer
TTGCTCCGCATCTCCCTGTTTTCCTCTGTTTTAATTCCGTTCTGTTTTTC
TTTCACTGTTCCGCATCATTCTTCACAAGTGGGTTTCGGAACGATGTCCG
TAACTTTGCACGATACATATATCAATCATTTAAGCAAGAAAGAAATGAGT
AAGAAAAACAATGACGAGCTGTTGGAAGACAAGCCCGAAAAAAGAGAAAG
GAGAATAGAGGACGGGGCATTCGTCCGTGTGGGAACGACGCTCTACAAGA
TGGTAAACCTGCCACTCGTCGGAGGCGGTTTCGTCAAGAAGCGCATCGTG
TGGAACAACGAGACGCTACGGCAGGACTACGGCAGGGACTATCTGGCGAC
CGTCCCGAAGTATGACGGCTTCTGCACCGTCCCCGACCATGTGAACTATC
AGCCCGTGATAGGCAGTTTCCTCAATCTCTACGAGCCGACGGGACACCAG
CCGAAGAAAGGTGCGTTTCCCCATATAGAGACATTGGTAAGGCACATCTT
CGGGGAGCAGTACGAGCTGGGCATGGACTATTTGCAACTGCTCTACCTGC
GTCCCATACAGAAACTGCCCATCCTGCTGCTCGTATCGGAGGAGCGAAAC
ACGGGCAAGAGCACATTTCTCAACTTCCTCAAAGCCCTCTTCGGCAGCAA
TGTAACCTTCAACACCAACGAGGACTTTCGAAGTCAGTTCAACTCGGAC

Los Alamos National Laboratory • Est 1943

Operated by Los Alamos National Security, LLC for the U.S. Department of Energy's National Nuclear Security Administration
Inside | © Copyright 2006 LANS LLC All rights reserved | Disclaimer/Privacy