Basic Search | Intermediate Search | Advanced Search | Gene Image Map |  Sequence Search |  Protein Motif Search |  Repeat Search |  DNA/RNA Motif Search |  Home

Porphyromonas gingivalis Search Results

Record: 1 of 1  
MiniMap IGR0845 IGR0848 IGR0851 IGR0852 IGR0853 IGR0847 IGR0846 IGR0849 IGR0850 PG0993 PG0987 PG0986.1 PG0990 PG0991 bipH, - PG0994 bmpH,mob, - PG0988 panD, - PG0995 PG0989 PG0997 ffh, - PG0996 PG0999 PG0993 PG0987 PG0986.1 PG0990 PG0991 bipH, - PG0994 bmpH,mob, - PG0988 panD, - PG0995 PG0989 PG0997 ffh, - PG0996 PG0999 Type: tandem, Name: tan9 - 217 PG0993 PG0986.1 PG0990 PG0991 bipH, - PG0994 bmpH,mob, - PG0988 PG0987 panD, - PG0995 PG0989 PG0997 ffh, - PG0996 PG0999


LANL Gene ID: PG0993

GenBank Locus Tag:

DNA Molecule Name:
1  

Genomic Island ID:
10

GenBank ID:


 Gene Name:


 Definition:
hypothetical protein

 Cellular Location:
Cytoplasm [Evidence]

 Gene Start:
1185619

Gene Stop:
1185233

Gene Length:
387

Molecular Weight*:
14714

pI*:
9.40

Net Charge*:
5.05

EC:
 

 Functional Class:
Unknown; Hypothetical  

 Gene Ontology:

Pathway: pathway table

 Comment:
NO TIGR ID corresponds to this gene.

 Human Oral Microbiome Database:
View in HOMD Genome Viewer

 Blast Summary:  PSI-Blast Search
No significant hits in gapped BLAST.

 Top Blast Hits:  Updated monthly
Click here to view the entire PsiBlast results.
 gi|34540598|ref|NP_905077.1|  lipoprotein, putative [Porphyr...    88   2e-16
 gi|150007392|ref|YP_001302135.1|  hypothetical protein BDI_0...    88   2e-16
 gi|156107057|gb|EDO08802.1|  hypothetical protein BACOVA_046...    86   9e-16
 gi|153809549|ref|ZP_01962217.1|  hypothetical protein BACCAC...    85   1e-15
 gi|29348546|ref|NP_812049.1|  hypothetical protein BT_3137 [...    85   2e-15
 gi|29349428|ref|NP_812931.1|  hypothetical protein BT_4020 [...    84   2e-15
 gi|150010081|ref|YP_001304824.1|  hypothetical protein BDI_3...    84   2e-15
 gi|150006221|ref|YP_001300965.1|  hypothetical protein BVU_3...    81   2e-14
 gi|154491553|ref|ZP_02031179.1|  hypothetical protein PARMER...    78   2e-13
 gi|150008749|ref|YP_001303492.1|  hypothetical protein BDI_2...    74   4e-12


InterPro Summary:  InterProScan

No hits reported.

COGS Summary:  COGS Search
No hit to the COGs database.
Blocks Summary:  Blocks Search
No significant hit to the Blocks database.

 ProDom Summary:  Protein Domain Search
No significant hit to the ProDom database.

Paralogs:  Local Blast Search
Residues 13-114 are 40% similar to PG1270 and PG0737, both hypothetical proteins.

Pfam Summary:  Pfam Search
No significant hits to the Pfam 11.0 database

 Structural Feature(s):
Feature Type  Start  Stop
No predicted structural features.  
  

Top PDB Hits:
No significant hits to the PDB database (E-value < E-10).

Gene Protein Sequence:
MTMKGKGINSNVRQIITVDEHGNITVPNEEIWMSEYEIADLLGVFGHTIR
TQVKKIYRDGLLHSCTAERNIRVAEGRWLDVYSLEMVIALAFRIRSQRAK
RLRKHVIAMLTERHGGFIMFLPAEAGCSC

Gene Nucleotide Sequence:  Sequence Viewer
ATGACAATGAAAGGGAAAGGCATAAACAGCAATGTCCGTCAGATAATCAC
GGTGGACGAACATGGGAACATCACCGTACCCAATGAAGAAATATGGATGA
GCGAGTATGAGATTGCCGACCTGCTGGGCGTATTCGGACATACCATCCGC
ACGCAGGTCAAGAAGATATACAGGGATGGACTGCTGCACTCCTGCACGGC
AGAGAGGAACATCAGGGTGGCGGAGGGTCGCTGGCTTGATGTGTACAGCC
TTGAAATGGTCATAGCCCTTGCGTTCCGCATCAGGTCGCAAAGGGCAAAA
AGGCTTCGAAAGCATGTCATCGCAATGCTGACCGAACGACACGGAGGCTT
TATCATGTTCCTCCCAGCAGAAGCAGGTTGTTCCTGC

Los Alamos National Laboratory • Est 1943

Operated by Los Alamos National Security, LLC for the U.S. Department of Energy's National Nuclear Security Administration
Inside | © Copyright 2006 LANS LLC All rights reserved | Disclaimer/Privacy