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Porphyromonas gingivalis Search Results

Record: 1 of 1  
MiniMap IGR0906 IGR0908 IGR0910 IGR0909 IGR0904 IGR0907 IGR0905 PG1064 PG1065 ISPg1, - PG1062 PG1066 PG1063 PG1060 bioF, - PG1061 PG1059 PG1064 PG1065 ISPg1, - PG1062 PG1066 PG1063 PG1060 bioF, - PG1061 PG1059 Type: IS element, Name: ISPg1 - 2 PG1064 PG1065 ISPg1, - PG1062 PG1066 PG1065.1 PG1065.1 PG1063 PG1060 bioF, - PG1061 PG1059 PG1061.2 PG1061.2


LANL Gene ID: PG1061.2

GenBank Locus Tag:

DNA Molecule Name:
1  

Genomic Island ID:
11

GenBank ID:


 Gene Name:


 Definition:
hypothetical protein

 Cellular Location:
Cytoplasm [Evidence]

 Gene Start:
1275254

Gene Stop:
1275502

Gene Length:
249

Molecular Weight*:
9352

pI*:


Net Charge*:


EC:
 

 Functional Class:
Unknown; Hypothetical  

 Gene Ontology:

Pathway: pathway table

 Comment:
NO TIGR ID corresponds to this gene.

 Human Oral Microbiome Database:
View in HOMD Genome Viewer

 Blast Summary:  PSI-Blast Search
No hits found in gapped BLAST.

 Top Blast Hits:  Updated monthly
Click here to view the entire PsiBlast results.


***** No hits found ******




InterPro Summary:  InterProScan













noIPR
unintegrated		






unintegrated





signalp
[1-40]? NA signalp signal-peptide
signal-peptide




tmhmm
[23-43]? NA tmhmm transmembrane_regions
transmembrane_regions












COGS Summary:  COGS Search
No hit to the COGs database.


Blocks Summary:  Blocks Search
No significant hit to the Blocks database.


ProDom Summary:  Protein Domain Search
No significant hit to the ProDom database.

Paralogs:  Local Blast Search
Residues 35-83 are 63% similar to PG0837, a predicted hypothetical protein. Similarities are also seen to PG1663 and PG1086.1.

Pfam Summary:  Pfam Search
No significant hits to the Pfam 11.0 database


Structural Feature(s):
Feature Type  Start  Stop
No predicted structural features.  
  
transmembrane  
22  
38

Top PDB Hits:
No significant hits to the PDB database (E-value < E-10).

Gene Protein Sequence:

LIFSPDEYEKISTLWHRRAQRMGILVAPVLWSAICGFAHSILYPQRRTRD
TGICFLRPLQNKEVEGRGVLGIKGASERGGSKE

Gene Nucleotide Sequence:  Sequence Viewer

TTGATATTCTCCCCTGATGAATATGAAAAAATTTCCACTCTATGGCATAG
GAGGGCGCAAAGGATGGGCATATTGGTTGCTCCTGTTCTATGGTCTGCTA
TTTGTGGCTTCGCTCATAGCATCCTATACCCGCAACGAAGAACCCGTGAT
ACCGGCATTTGCTTTTTGAGACCTTTGCAAAATAAGGAGGTGGAGGGAAG
AGGAGTTCTTGGCATAAAAGGAGCGAGTGAAAGGGGTGGCAGTAAGGAG








    

      
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