Basic Search | Intermediate Search | Advanced Search | Gene Image Map |  Sequence Search |  Protein Motif Search |  Repeat Search |  DNA/RNA Motif Search |  Home

Porphyromonas gingivalis Search Results

Record: 1 of 1  
MiniMap IGR0906 IGR0908 IGR0910 IGR0909 IGR0911 IGR0907 IGR0912 IGR0905 PG1067 PG1064 PG1065 ISPg1, - PG1062 PG1066 PG1063 bioF, - PG1061 PG1067 PG1064 PG1065 ISPg1, - PG1062 PG1066 PG1063 bioF, - PG1061 Type: IS element, Name: ISPg1 - 2 PG1067 PG1064 PG1065 ISPg1, - PG1062 PG1066 PG1065.1 PG1065.1 PG1063 bioF, - PG1061 PG1061.2 PG1061.2


LANL Gene ID: PG1065

GenBank Locus Tag:

DNA Molecule Name:
1  

Genomic Island ID:
11

GenBank ID:


 Gene Name:


 Definition:
conserved hypothetical protein

 Cellular Location:
Cytoplasm [Evidence]

 Gene Start:
1279269

Gene Stop:
1278268

Gene Length:
1002

Molecular Weight*:
38287

pI*:
6.20

Net Charge*:
-3.42

EC:
 

 Functional Class:
Unknown; Conserved hypothetical  

 Gene Ontology:

Pathway: pathway table

 Comment:
NO TIGR ID corresponds to this gene.

 Human Oral Microbiome Database:
View in HOMD Genome Viewer

 Blast Summary:  PSI-Blast Search
Several weak hits in gapped BLAST; e.g. residues 118-275 are 31% similar to gb|AAF11748.1|AE002053_3 ATP-dependent DNA helicase RecG-related protein of Deinococcus radiodurans, residues 194-286 are 32% similar to emb|CAB50412.1| hypothetical protein of Pyrococcus abyssi, residues 119-286 are 28% similar to pir||T45499 probable DNA recombinase recG of Thiobacillus ferrooxidans.

Top Blast Hits:  Updated monthly
Click here to view the entire PsiBlast results.
 gi|153805907|ref|ZP_01958575.1|  hypothetical protein BACCAC...   371   e-101
 gi|124002671|ref|ZP_01687523.1|  putative transcriptional re...   324   5e-87
 gi|78189188|ref|YP_379526.1|  putative transcriptional regul...   301   5e-80
 gi|68550659|ref|ZP_00590102.1|  similar to transcriptional r...   279   1e-73
 gi|114321447|ref|YP_743130.1|  putative transcriptional regu...   233   2e-59
 gi|68550812|ref|ZP_00590250.1|  Protein of unknown function ...   101   8e-20
 gi|110597666|ref|ZP_01385951.1|  Divergent AAA region [Chlor...    97   2e-18
 gi|20090964|ref|NP_617039.1|  hypothetical protein MA2121 [M...    94   1e-17
 gi|91215835|ref|ZP_01252804.1|  putative transcriptional reg...    93   2e-17
 gi|60682763|ref|YP_212907.1|  hypothetical protein BF3295 [B...    92   5e-17


InterPro Summary:  InterProScan

No hits reported.

COGS Summary:  COGS Search
No hit to the COGs database.
Blocks Summary:  Blocks Search
No significant hit to the Blocks database.

 ProDom Summary:  Protein Domain Search
Residues 125-286 are 28% similar to a (ATP-DEPENDENT DNA HELICASE RECG) protein domain (PD106643 which is seen in RECG_THIFE.


Paralogs:  Local Blast Search
Residues 143-278 are 28% similar to PG1335, a hypothetical protein. Similarites are also seen to PG1323, a putative RecG protein.

Pfam Summary:  Pfam Search
No significant hits to the Pfam 11.0 database

 Structural Feature(s):
Feature Type  Start  Stop
No predicted structural features.  
  

Top PDB Hits:
No significant hits to the PDB database (E-value < E-10).

Gene Protein Sequence:
MTVEKFHFDEGDVLVAEVQPSEFPPVRYRGRVWVRVGPRKSIATEAEEKI
LTERRLSNIHTFDAMPCLGTSIDDLDVSLIRKEFLPKAVAEDVLGEDKRD
ITDQFASLGLYDLRYNCPTNGAIVLFGKNPERHVHGAYIQYVRFKGKDRA
GDILNEHKFSGNLCRVLPKIDAFVETSISQKRPIPVSVLREETVSKYPYW
ATRELLMNAIMHRDYEGNAPIQFYEYDDRIEIQNPGGLYGKVSPDNFPNV
SDYRNPFIAEAMKVLGYVNRFSRGVYRVQKELEENGNGQASFDFSLITAF
RVVENVSQKYFEEGFGGETAQEKHRKDPRKAQEI

Gene Nucleotide Sequence:  Sequence Viewer
ATGACAGTAGAGAAGTTCCATTTTGATGAAGGGGATGTATTGGTGGCAGA
AGTTCAGCCCTCAGAATTTCCTCCTGTACGTTATCGCGGGCGCGTTTGGG
TACGTGTGGGTCCTCGAAAAAGCATTGCAACAGAGGCAGAAGAAAAGATA
CTTACCGAAAGACGGCTCTCCAACATTCATACCTTTGACGCCATGCCTTG
CCTAGGCACGAGCATTGACGACTTGGATGTATCTCTCATTCGTAAGGAGT
TTTTGCCCAAGGCTGTGGCAGAGGATGTTCTCGGTGAAGACAAACGAGAT
ATCACGGATCAATTTGCCTCTCTTGGCTTATATGATTTGCGTTATAACTG
TCCGACTAATGGGGCTATTGTCCTATTCGGAAAGAATCCTGAGCGACACG
TACATGGGGCGTATATTCAATATGTTCGCTTCAAGGGTAAGGATCGTGCG
GGTGATATTCTCAACGAACATAAGTTTAGCGGTAATCTTTGTCGGGTATT
GCCTAAGATTGATGCTTTTGTCGAGACAAGTATCTCACAAAAGCGTCCCA
TTCCCGTGAGTGTACTTCGGGAAGAAACAGTTTCCAAGTATCCATACTGG
GCTACTCGAGAGTTGTTGATGAATGCCATTATGCACAGGGATTACGAGGG
AAACGCTCCTATTCAGTTTTATGAGTATGATGATCGCATTGAGATCCAAA
ACCCCGGCGGATTGTACGGCAAGGTCAGTCCCGACAATTTCCCCAATGTT
AGCGATTATCGGAATCCCTTTATTGCCGAAGCAATGAAAGTCTTGGGCTA
TGTAAACCGATTCAGCCGTGGAGTCTATCGAGTTCAGAAGGAGTTGGAAG
AAAACGGTAACGGGCAAGCCTCTTTTGATTTTTCATTGATTACAGCTTTT
CGAGTAGTCGAGAACGTTTCTCAAAAGTATTTTGAAGAAGGCTTTGGGGG
AGAAACAGCCCAAGAAAAGCACAGGAAAGACCCAAGAAAAGCCCAAGAAA
TA

Los Alamos National Laboratory • Est 1943

Operated by Los Alamos National Security, LLC for the U.S. Department of Energy's National Nuclear Security Administration
Inside | © Copyright 2006 LANS LLC All rights reserved | Disclaimer/Privacy