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Record: 1 of 1 MiniMap

LANL Gene ID: PG1099GenBank Locus Tag: PG1244DNA Molecule Name: 1 Genomic Island ID: 23 GenBank ID: 34540950 Gene Name: ISPg1 Definition: ISPg1 transposase (IS1106-related transposase) Cellular Location: Cytoplasm [Evidence] Gene Start: 1319677 Gene Stop: 1320759 Gene Length: 1083 Molecular Weight*: 88470 pI*: 10.20 Net Charge*: 14.72 EC: Functional Class: Transposon functions Gene Ontology: Biological process GO:0006313 transposition, DNA-mediated Molecular function GO:0003677 DNA binding GO:0004803 transposase activity Pathway: pathway table Primary Evidence: Hanley,S.A., Aduse-Opoku,J. and Curtis,M.A. A 55-kilodalton immunodominant antigen of Porphyromonas gingivalis W50 has arisen via horizontal gene transfer Infect. Immun. 67 (3), 1157-1171 (1999), PubMed: . Maley,J. and Roberts,I.S. Characterisation of IS1126 from Porphyromonas gingivalis W83: a new member of the IS4 family of insertion sequence elements Microbiol. Lett. 123 (1-2), 219-224 (1994), PubMed: . Shibata,Y., Hayakawa,M., Takiguchi,H., Shiroza,T. and Abiko,Y. Determination and characterization of the hemagglutinin-associated short motifs found in Porphyromonas gingivalis multiple gene products. J. Biol. Chem. 274 (8), 5012-5020 (1999), PubMed: . Secondary Evidence: Knight,A.I., Ni,H., Cartwright,K.A. and McFadden,J.J. Identification and characterization of a novel insertion sequence, IS1106, downstream of the porA gene in B15 Neisseria meningitidis. Mol. Microbiol. 6 (11), 1565-1573 (1992), PubMed: . Comment: Member of the IS5 family of elements. A full-length ISPg1 element. TIGR ID: PG1244 Human Oral Microbiome Database: View in HOMD Genome Viewer Blast Summary: PSI-Blast Search PG1099 is equivalent to the previously sequenced AB015879 in GenBANK. See also AJ130872. Residues 31-350 are 34% similar to the IS1106 transposase of N.meningitidis (AE002488). Top Blast Hits: Updated monthly Click here to view the entire PsiBlast results. gi|34540279|ref|NP_904758.1| ISPg1, transposase [Porphyromo... 715 0.0 gi|4001716|dbj|BAA35090.1| ORF7 [Porphyromonas gingivalis] 704 0.0 gi|34540041|ref|NP_904520.1| ISPg1, transposase [Porphyromo... 680 0.0 gi|3901097|emb|CAA10225.1| transposase [Porphyromonas gingi... 675 0.0 gi|1361314|pir||S57895 hypothetical protein 1 - Porphyromon... 583 e-165 gi|3869078|dbj|BAA34342.1| Insertion sequence IS1126-like g... 307 6e-82 gi|91218509|ref|ZP_01255448.1| ISPg1, transposase [Psychrof... 306 2e-81 gi|34541013|ref|NP_905492.1| ISPg1, transposase, internal d... 302 2e-80 gi|91216745|ref|ZP_01253710.1| ISPg1, transposase [Psychrof... 246 2e-63 gi|15677391|ref|NP_274546.1| IS1106 transposase [Neisseria ... 187 9e-46 InterPro Summary: InterProScan

InterPro
IPR002559
Domain

Transposase, IS4-like
PF01609		Transposase_11

COGS Summary: COGS Search No hit to the COGs database. Blocks Summary: Blocks Search No significant hit to the Blocks database. ProDom Summary: Protein Domain Search Residues 157-302 are 97% similar to a (TRANSPOSASE PLASMID PROTEIN ELEMENT) protein domain (PD004652 which is seen in Q9ZAD0_PORGI. Residues 12-109 are 98% similar to a (TRANSPOSASE PROTEIN INSERTION ELEMENT) protein domain (PD007264 which is seen in Q9ZAD0_PORGI. Residues 303-361 are 96% similar to a (TRANSPOSASE ORF7 INSERTION SEQUENCE IS1126-LIKE GENE) protein domain (PD187845 which is seen in Q9ZAD0_PORGI. Residues 110-156 are identical to a (TRANSPOSASE ORF7 INSERTION SEQUENCE IS1126-LIKE GENE) protein domain (PD187846 which is seen in Q9ZA61_PORGI. Paralogs: Local Blast Search PG1099 is virtually identical to PG1267, PG0169, PG1050, PG1062, PG0740, PG0918, PG1422, PG0420, PG0499, and PG1662. Partial similarities exist to PG0732, PG0842, PG1607, PG0731, PG0884, PG1184, PG1087, PG0763, PG1755, PG0686, PG0756, PG1798, PG1230, PG1919, PG0044, PG0689, PG1215, PG1665, PG0839, PG1895, PG0883, PG11231, PG0730, PG1159 and PG1608. Pfam Summary: Pfam Search Residues 147 to 348 (E-value = 9.4e-36) place PG1099 in the Transposase_11 family which is described as Transposase DDE domain (PF01609) Structural Feature(s): Feature Type Start Stop transmembrane 58 74 non-globular 168 218 Top PDB Hits: No significant hits to the PDB database (E-value < E-10). Gene Protein Sequence: MAYQSKNTDEHVTFADALLSKRYRKAQNDFLNQVERLIDWRPIRTLINKK YTKRQNAIGAPAYDVILLFKMLLLETWYNLSDCALEERINDSITFSRFLG LKMEEVSPDHSTISRFRSALTELGLMDKLLAQFNKQLSRHHISVREGVLV DASLVETPHKPNGTITIEVADDREDNRSEAEKEAEEDYQKQVVRRRKGTD EEARWVYKQKRYHYGYKKHCLTNVQGIVQKVITTAANRSDTKEFIPLLQG ANIPQGTAVLADKGYACGENRSYLQTHHLQDGIMHKAQRNRALTEEEKQG NKAISPIRSTIERTFGSIRRWFHGGRCRYRGLAKTHTQNILESIAFNLYR TPGIIMSSSLG Gene Nucleotide Sequence: Sequence Viewer ATGGCATACCAATCCAAGAATACCGATGAGCATGTAACATTTGCAGACGC ACTCCTTTCAAAGCGTTATCGCAAAGCACAAAACGACTTCCTCAATCAGG TTGAGAGGCTTATCGATTGGCGTCCGATCAGGACGCTGATCAACAAGAAA TACACGAAGCGACAAAATGCCATCGGCGCCCCGGCTTATGACGTGATTCT CTTATTCAAGATGTTGCTTTTGGAGACATGGTACAACCTCAGTGATTGTG CTTTGGAGGAGCGCATCAATGATTCAATCACCTTTTCCCGATTCTTGGGA CTGAAGATGGAAGAGGTATCTCCCGACCACAGCACCATCAGTCGATTTCG TTCGGCACTGACAGAGTTGGGGCTCATGGACAAACTATTGGCGCAGTTTA ACAAACAACTTTCCCGCCATCACATTTCGGTCAGGGAAGGGGTGCTTGTC GATGCAAGCCTTGTGGAGACGCCACATAAACCCAACGGAACCATTACGAT TGAAGTCGCAGACGACAGAGAAGACAATCGGAGCGAGGCGGAAAAAGAGG CAGAGGAGGATTATCAAAAACAGGTTGTCCGCCGGCGTAAAGGGACGGAT GAAGAAGCCCGTTGGGTGTACAAACAAAAGCGTTATCACTACGGATACAA AAAGCATTGTCTGACCAATGTTCAAGGCATTGTTCAAAAGGTGATAACGA CwGCAGCGAACCGCAGTGACACGAAGGAGTTTATTCCGCTATTGCAGGGT GCAAACATACCTCAAGGCACAGCCGTCTTGGCGGACAAAGGATATGCTTG CGGGGAAAATCGTTCCTACCTGCAAACCCATCACCTTCAAGACGGCATCA TGCACAAGGCACAACGCAACAGGGCATTGACCGAGGAAGAGAAGCAAGGA AACAAAGCAATCAGTCCGATACGGAGCACCATCGAACGCACCTTTGGCAG TATTCGCCGGTGGTTTCATGGCGGACGATGTCGATACCGGGGACTTGCCA AGACCCATACTCAAAACATTCTTGAAAGCATCGCCTTTAATTTATACAGA ACCCCGGGGATAATTATGTCCTCATCTCTAGGA Los Alamos National Laboratory • Est 1943 Operated by Los Alamos National Security, LLC for the U.S. Department of Energy's National Nuclear Security Administration Inside | © Copyright 2006 LANS LLC All rights reserved | Disclaimer/Privacy

`Feature Type`	`Start`	`Stop`
`transmembrane`	`58`	`74`
`non-globular`	`168`	`218`