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Porphyromonas gingivalis Search Results

Record: 1 of 1  
MiniMap tRNA-Arg-4 IGR0991 IGR0995 IGR0990 IGR0996 IGR0997 IGR0989 IGR0994 IGR0993 IGR0988 IGR0992 PG1163 PG1156 rpoD,sigW, - PG1158 ruvC, - PG1162 slyD, - PG1155 aroC, - PG1154 fhs, - PG1160 ISPg1, - PG1159 PG1164 phoH, - PG1161 PG1163 PG1156 rpoD,sigW, - PG1158 ruvC, - PG1162 slyD, - PG1155 aroC, - PG1154 fhs, - PG1160 ISPg1, - PG1159 PG1164 phoH, - PG1161 Type: IS element, Name: ISPg1 fragment - 3 Type: IS element, Name: ISPg1 fragment - 3 PG1163 rpoD,sigW, - PG1158 ruvC, - PG1162 slyD, - PG1155 aroC, - PG1154 fhs, - PG1160 PG1157 PG1156 PG1157 ISPg1, - PG1159 PG1164 phoH, - PG1161


LANL Gene ID: PG1159

GenBank Locus Tag: PG1320

DNA Molecule Name:
1  

Genomic Island ID:
24

GenBank ID:
34541013

 Gene Name:
ISPg1  

 Definition:
ISPg1 fragment (IS1126-related transposase fragment)

 Cellular Location:
Cytoplasm [Evidence]

 Gene Start:
1398895

Gene Stop:
1399527

Gene Length:
633

Molecular Weight*:
24285

pI*:
10.40

Net Charge*:
11.25

EC:
 

 Functional Class:
Transposon functions  

 Gene Ontology:
Biological process
  GO:0006313    transposition, DNA-mediated

Molecular function
  GO:0003677    DNA binding
  GO:0004803    transposase activity


 Pathway: pathway table

 Primary Evidence:
Hanley,S.A., Aduse-Opoku,J. and Curtis,M.A.
A 55-kilodalton immunodominant antigen of Porphyromonas gingivalis
W50 has arisen via horizontal gene transfer
Infect. Immun. 67 (3), 1157-1171 (1999)

Maley,J. and Roberts,I.S.
Characterisation of IS1126 from Porphyromonas gingivalis W83: a new member of the IS4 family of insertion sequence elements
Microbiol. Lett. 123 (1-2), 219-224 (1994)

Shibata,Y., Hayakawa,M., Takiguchi,H., Shiroza,T. and Abiko,Y.
Determination and characterization of the hemagglutinin-associated
short motifs found in Porphyromonas gingivalis multiple gene
products. J. Biol. Chem. 274 (8), 5012-5020 (1999)

 Comment:
Member of the IS5 family of elements. Equivalent to the N-terminal domains of full-length ISPg1 elements such as PG1662.

TIGR ID: PG1320

 Human Oral Microbiome Database:
View in HOMD Genome Viewer

 Blast Summary:  PSI-Blast Search
PG1159 is equivalent to the previously sequenced AB019363 in GenBANK, a predicted IS1126-related transposase. Residues 10-166 are 31% similar to the TnpA3 sequence of P.stutzeri (AF039534).

 Top Blast Hits:  Updated monthly
Click here to view the entire PsiBlast results.
 gi|34541013|ref|NP_905492.1|  ISPg1, transposase, internal d...   430   e-119
 gi|3869078|dbj|BAA34342.1|  Insertion sequence IS1126-like g...   402   e-111
 gi|4001716|dbj|BAA35090.1|  ORF7 [Porphyromonas gingivalis]       304   2e-81
 gi|34540041|ref|NP_904520.1|  ISPg1, transposase [Porphyromo...   302   8e-81
 gi|34540279|ref|NP_904758.1|  ISPg1, transposase [Porphyromo...   302   8e-81
 gi|3901097|emb|CAA10225.1|  transposase [Porphyromonas gingi...   296   6e-79
 gi|1361314|pir||S57895  hypothetical protein 1 - Porphyromon...   232   9e-60
 gi|91218509|ref|ZP_01255448.1|  ISPg1, transposase [Psychrof...   145   1e-33
 gi|91216745|ref|ZP_01253710.1|  ISPg1, transposase [Psychrof...   145   2e-33
 gi|39934368|ref|NP_946644.1|  putative IS5 transposase [Rhod...    96   9e-19


InterPro Summary:  InterProScan

InterPro
IPR002559
Domain
Transposase, IS4-like
PF01609 [35-198]T 15.0000018756781 PF01609 Transposase_11 Transposase_11


COGS Summary:  COGS Search
No hit to the COGs database.
Blocks Summary:  Blocks Search
No significant hit to the Blocks database.

 ProDom Summary:  Protein Domain Search
Residues 12-109 are 97% similar to a (TRANSPOSASE PROTEIN INSERTION ELEMENT) protein domain (PD007264 which is seen in Q9ZAD0_PORGI.

Residues 157-211 are identical to a (TRANSPOSASE ORF7 INSERTION SEQUENCE IS1126-LIKE GENE) protein domain (PD187845 which is seen in Q9ZAD0_PORGI.

Residues 110-156 are 97% similar to a (TRANSPOSASE ORF7 INSERTION SEQUENCE IS1126-LIKE GENE) protein domain (PD187846 which is seen in Q9ZAD0_PORGI.


Paralogs:  Local Blast Search
PG1159 is similar to the N-terminal regions of PG0842, PG0732, PG1662, PG1422, PG1267, PG1062, PG1050, PG0918, PG0740, PG0169, PG0499, PG0420, PG1608, PG1607, PG0884, PG0731, PG1665, PG0689, PG1895, PG1215, PG0839, PG1919, PG1798, PG1230, PG0756, PG0044, PG1755, PG1184, PG1087, PG0763, PG0686, PG0883, PG1231, PG0730, all ISPg1 related elements. See in particular PG0731 and PG0884.

Pfam Summary:  Pfam Search
No significant hits to the Pfam 11.0 database

 Structural Feature(s):
Feature Type  Start  Stop
No predicted structural features.  
  
transmembrane  
57  
73

Top PDB Hits:
No significant hits to the PDB database (E-value < E-10).

Gene Protein Sequence:
MACQSKNTDEHVTFADALLSKRYRKAQNDFLNQVDRLIDWRPIRTLINKK
YTKRQNAIGAPAYDVILLFKMLLPKTWYNLSDCALEERINDSITFSRFLG
LKMEEVSPDHSTISRFCSALTELGLMDKLLAQFNKQLSRHHISVREGVLV
DASLVEIRSTIERTFGSIRRWFHGGRCRYRGLAKTHTQNILESIAFNLYR
TPGIIMSSSVG

Gene Nucleotide Sequence:  Sequence Viewer
ATGGCATGCCAATCCAAGAATACCGATGAGCATGTAACATTTGCAGACGC
ACTCCTTTCAAAGCGTTATCGCAAAGCACAAAACGACTTCCTCAATCAGG
TTGACAGGCTTATCGATTGGCGTCCGATCAGGACGCTGATCAACAAGAAA
TACACGAAGCGACAAAATGCCATCGGTGCCCCGGCTTATGACGTGATTCT
CTTATTCAAGATGTTGCTTCCGAAGACATGGTACAACCTCAGTGATTGTG
CTTTGGAGGAGCGCATCAATGATTCAATCACCTTTTCCCGATTCTTGGGG
CTGAAGATGGAAGAGGTATCTCCCGACCACAGCACCATCAGTCGATTTTG
TTCGGCACTGACAGAGTTGGGTCTCATGGACAAACTGTTGGCGCAATTTA
ACAAACAACTTTCCCGCCATCACATTTCGGTAAGGGAAGGGGTGCTTGTC
GATGCAAGCCTTGTGGAGATACGGAGCACCATCGAACGCACCTTTGGCAG
TATTCGCCGGTGGTTTCATGGCGGACGATGTCGATACCGGGGACTTGCCA
AGACCCATACTCAAAACATTCTTGAAAGCATCGCCTTTAATTTATACAGA
ACCCCGGGGATAATTATGTCCTCATCCGTAGGA

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