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Porphyromonas gingivalis Search Results

Record: 1 of 1  
MiniMap IGR1008 IGR1005 IGR1003 IGR1007 IGR1004 IGR1006 IGR1009 PG1173.1 PG1173 PG1172 PG1171 lctP, - PG1176 pntA, - PG1169 mucA, - PG1174 pntA, - PG1168 umuC, - PG1175 pntB, - PG1170 PG1173.1 PG1173 PG1172 PG1171 lctP, - PG1176 pntA, - PG1169 mucA, - PG1174 pntA, - PG1168 umuC, - PG1175 pntB, - PG1170 Type: tandem, Name: tan78 - 286 PG1173.1 PG1173 PG1172 PG1171 lctP, - PG1176 pntA, - PG1169 mucA, - PG1174 pntA, - PG1168 umuC, - PG1175 pntB, - PG1170


LANL Gene ID: PG1172

GenBank Locus Tag: PG1334

DNA Molecule Name:
1  

Genomic Island ID:
24

GenBank ID:
34541024

 Gene Name:


 Definition:
conserved hypothetical protein (possible secreted protein) (possible protease) (stomatin-like protein)

 Cellular Location:
Cytoplasm, Periplasm [Evidence]

 Gene Start:
1416495

Gene Stop:
1415518

Gene Length:
978

Molecular Weight*:
36537

pI*:
7.50

Net Charge*:
0.27

EC:
 

 Functional Class:
Unknown; Conserved hypothetical  

 Gene Ontology:
Cellular component
  GO:0016020    membrane


 Pathway: pathway table

 Comment:
TIGR ID: PG1334

 Proteomic Data: Proteomic Data Search
TIGR Annotationband 7/Mec-2 family protein, GroupT (unknown function)
ORF #PG-PP/PG-PPC1PG-PP/PG-PPC2
Spectral CountPeptide IntensitySpectral CountPeptide Intensity
ProqValProqValProqValProqVal
TIGRPG13340.830.000130.966.8e-06-0.010.370.966.8e-06
LANLPG11721.781.951.001.22
ConsensusSP1IP1SP2IP2

Human Oral Microbiome Database:
View in HOMD Genome Viewer

 Blast Summary:  PSI-Blast Search
Numerous significant hits in gapped BLAST; e.g. residues 23-314 are 47% similar to emb|CAB94650.1| putative secreted protein of Streptomyces coelicolor A3(2), residues 21-325 are 45% similar to gb|AAD35948.1|AE001753_4 conserved hypothetical protein of Thermotoga maritima, residues 23-324 are 43% similar to gb|AAB85197.1| stomatin-like protein of Methanothermobacter thermautotrophicus, residues 11-325 are 40% similar to AP002552, a putative protease, of E. coli.

 Top Blast Hits:  Updated monthly
Click here to view the entire PsiBlast results.
 gi|34541024|ref|NP_905503.1|  band 7/Mec-2 family protein [P...   558   e-157
 gi|116749740|ref|YP_846427.1|  band 7 protein [Syntrophobact...   379   e-103
 gi|89210957|ref|ZP_01189338.1|  Band 7 protein [Halothermoth...   353   1e-95
 gi|108758410|ref|YP_632164.1|  SPFH/band 7 domain protein [M...   263   1e-68
 gi|119716804|ref|YP_923769.1|  band 7 protein [Nocardioides ...   260   6e-68
 gi|115380094|ref|ZP_01467133.1|  band 7/Mec-2 family protein...   259   2e-67
 gi|21225504|ref|NP_631283.1|  secreted protein [Streptomyces...   252   3e-65
 gi|126348170|emb|CAJ89891.1|  putative secreted protein [Str...   248   4e-64
 gi|117928363|ref|YP_872914.1|  band 7 protein [Acidothermus ...   245   3e-63
 gi|145595536|ref|YP_001159833.1|  band 7 protein [Salinispor...   244   6e-63


InterPro Summary:  InterProScan

InterPro
IPR001107
Family
Band 7 protein
PF01145 [22-218]T 6.00001679190146E-65 PF01145 Band_7 Band_7
SM00244 [21-201]T 3.90000000000001E-52 SM00244 PHB PHB
InterPro
IPR001972
Family
Stomatin
PS01270 [157-185]T 8.0E-5 PS01270 BAND_7 BAND_7
noIPR
unintegrated
unintegrated
PTHR10264 [4-61]T 2.5000090991620002E-88 PTHR10264 PTHR10264[85-322]T 2.5000090991620002E-88 PTHR10264 PTHR10264 PTHR10264


COGS Summary:  COGS Search
BeTs to 15 clades of COG0330
COG name: Membrane protease subunits, stomatin/prohibitin homologs
Functional Class: O
The phylogenetic pattern of COG0330 is amTKYqVCEbrHuj--OL--X
Number of proteins in this genome belonging to this COG is 1
Blocks Summary:  Blocks Search
***** IPB001972 (Band 7 protein family/Stomatin) with a combined E-value of 1.2e-78.
    IPB001972A    22-39
    IPB001972B    83-128
    IPB001972C    136-183
    IPB001972D    184-217
    IPB001972E    283-298


 ProDom Summary:  Protein Domain Search
Residues 148-320 are 47% similar to a (PROTEIN TRANSMEMBRANE PROHIBITIN HFLC MEMBRANE STOMATIN) protein domain (PD001059 which is seen in O26788_METTH.

Residues 250-325 are 36% similar to a (HYPOTHETICAL 33.7 KD PROTEIN) protein domain (PD107534 which is seen in YBBK_ECOLI.

Residues 33-146 are 41% similar to a (PROTEIN TRANSMEMBRANE HFLK MEMBRANE) protein domain (PD186090 which is seen in YE88_MYCTU.


Paralogs:  Local Blast Search
No paralogs found in P. gingivalis.

Pfam Summary:  Pfam Search
Residues 23 to 218 (E-value = 1.1e-64) place PG1172 in the Band_7 family which is described as SPFH domain / Band 7 family (PF01145)

 Structural Feature(s):
Feature Type  Start  Stop
cleavable signal  
1  
39
transmembrane  
5  
22
coil-coil  
193  
224
coil-coil  
235  
268

Top PDB Hits:
No significant hits to the PDB database (E-value < E-10).

Gene Protein Sequence:
MTATGFILAALIILVIAIIANGLKIVQQSETMIIERLGKYYRTLSSGVSI
IIPFIDKPRPIRKRIAYTLPSGQNVVQFKDDTRIDLRETVYDFARQSVIT
RDNVVTEINAILYFQIVDPMRAMYEISNLPDAIEKLTQTSLRNVIGEMDL
DQTLTSRDTINSKLREILDEATNKWGVKVNRVELQDINPPRDIRDAMEKQ
MRAERDKRAQILQAEGQREALIRESEGKMQESINHAEGEKQAKILRAKAE
AEAKILVAKAEAEAIRQISEAVAGSGANPTQYLIAMQYIETLKDINKGDQ
TKTVYLPFEATGMLGALGGMKDLVKG

Gene Nucleotide Sequence:  Sequence Viewer
ATGACAGCAACAGGATTTATCCTTGCGGCTCTGATCATTCTTGTGATAGC
CATTATTGCCAATGGCTTGAAGATCGTGCAGCAGTCCGAGACCATGATCA
TCGAACGACTTGGCAAGTATTATCGTACGCTCAGTTCGGGAGTCAGTATC
ATCATCCCCTTTATCGACAAACCCCGTCCCATACGCAAGCGCATCGCTTA
TACACTACCCTCCGGACAGAATGTGGTGCAGTTCAAGGATGATACCCGTA
TCGACCTACGCGAAACGGTGTACGACTTTGCTCGCCAGAGTGTGATCACG
CGTGACAATGTGGTGACGGAGATCAATGCTATTCTCTATTTCCAGATCGT
GGATCCCATGCGTGCCATGTATGAGATTTCCAATTTGCCGGATGCCATCG
AGAAGCTGACTCAGACGAGTCTGCGTAACGTGATCGGGGAGATGGATTTG
GATCAGACGCTGACCAGTCGCGATACCATCAACAGCAAGCTGCGCGAAAT
CCTCGACGAAGCCACCAACAAATGGGGCGTGAAGGTAAACCGTGTGGAGC
TGCAGGACATCAATCCTCCGCGTGATATTCGTGATGCCATGGAGAAGCAG
ATGCGTGCCGAGCGTGACAAGCGTGCTCAAATCCTCCAGGCCGAAGGACA
GCGAGAGGCTTTGATACGCGAATCGGAGGGTAAGATGCAGGAGTCCATCA
ACCACGCTGAGGGAGAGAAGCAGGCCAAGATTCTCAGAGCCAAAGCTGAG
GCAGAGGCTAAGATATTGGTGGCCAAGGCAGAGGCCGAAGCTATCCGCCA
GATCAGCGAAGCAGTAGCCGGTAGTGGTGCCAATCCGACCCAATACCTCA
TTGCCATGCAGTATATCGAAACGCTCAAGGACATCAACAAGGGCGATCAG
ACCAAGACCGTTTACCTCCCGTTCGAGGCTACCGGTATGCTCGGTGCCTT
GGGCGGTATGAAGGATTTGGTGAAAGGA

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