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Porphyromonas gingivalis Search Results

Record: 1 of 1  
MiniMap IGR1072 IGR1070 IGR1071 IGR1074 IGR1069 IGR1073.1 IGR1073 PG1247.1 dacB,pbp, - PG1248 arcA,pad, - PG1249 ISPg5, - PG1246 ISPg5, - PG1247 PG1243 fumA,fumB, - PG1244 dnaX, - PG1245 PG1247.1 dacB,pbp, - PG1248 arcA,pad, - PG1249 ISPg5, - PG1246 ISPg5, - PG1247 PG1243 fumA,fumB, - PG1244 dnaX, - PG1245 Type: IS element, Name: ISPg5 - 8 PG1247.1 dacB,pbp, - PG1248 arcA,pad, - PG1249 ISPg5, - PG1246 ISPg5, - PG1247 PG1243 fumA,fumB, - PG1244 dnaX, - PG1245


LANL Gene ID: PG1246

GenBank Locus Tag: PG1419

DNA Molecule Name:
1  

GenBank ID:
34541095

Gene Name:
ISPg5  

Definition:
ISPg5-related orf-1

Cellular Location:
Cytoplasm [Evidence]

Gene Start:
1505140

Gene Stop:
1505532

Gene Length:
393

Molecular Weight*:
15024

pI*:
9.60

Net Charge*:
2.96

EC:
 

Functional Class:
Transposon functions  

Gene Ontology:

Pathway: pathway table

Primary Evidence:
Califano,J.V., Kitten,T., Lewis,J.P., Macrina,F.L.,
Fleischmann,R.D., Fraser,C.M., Duncan,M.J. and Dewhirst,F.E.
Characterization of Porphyromonas gingivalis insertion
sequence-like element ISPg5.
Infect. Immun. 68 (9), 5247-5253 (2000)
20407340


Comment:
See PG1247 for associated transposase.

Member of the IS3 family of insertion elements.

TIGR ID: PG1419

Human Oral Microbiome Database:
View in HOMD Genome Viewer

Blast Summary:  PSI-Blast Search
PG1246 is equivalent to the previously reported gb|AAF69127.1 in GenBANK.

Otherwise, no hits in gapped BLAST.

Top Blast Hits:  Updated monthly
Click here to view the entire PsiBlast results.
 gi|34540695|ref|NP_905174.1|  ISPg5, transposase Orf1 [Porph...   224   9e-58
 gi|34540398|ref|NP_904877.1|  ISPg5, transposase Orf1 [Porph...   223   3e-57
 gi|34539889|ref|NP_904368.1|  ISPg5 transposase Orf1 [Porphy...   218   8e-56
 gi|34540249|ref|NP_904728.1|  ISPg5, transposase Orf1 [Porph...   217   2e-55
 gi|7767502|gb|AAF69127.1|AF224744_1  unknown [Porphyromonas ...   214   1e-54
 gi|34540278|ref|NP_904757.1|  ISPg5, transposase Orf1 [Porph...   180   2e-44
 gi|156108434|gb|EDO10179.1|  hypothetical protein BACOVA_045...    72   7e-12
 gi|156112512|gb|EDO14257.1|  hypothetical protein BACOVA_000...    70   3e-11
 gi|29347279|ref|NP_810782.1|  hypothetical protein BT_1869 [...    69   8e-11


InterPro Summary:  InterProScan

No hits reported.

COGS Summary:  COGS Search
No hit to the COGs database.
Blocks Summary:  Blocks Search
No significant hit to the Blocks database.

 ProDom Summary:  Protein Domain Search
No significant hit to the ProDom database.

Paralogs:  Local Blast Search
PG1246 is 86-100% similar to (in order of increasing similarity) PG0419, PG0392, PG0008, PG0033, PG1437, PG1490, PG1797, PG1862, PG0532, and PG0840, all ORFs associated with ISPg5-related transposases.

Pfam Summary:  Pfam Search
No significant hits to the Pfam 11.0 database

 Structural Feature(s):
Feature Type  Start  Stop
coil-coil  
81  
112

Top PDB Hits:
No significant hits to the PDB database (E-value < E-10).

Gene Protein Sequence:
LTVGGMQPVSIMGKHLNNFERLSILEDYLSGSDSKVAIEQKYGLSHGLIR
SWLRKFGLEDKVHPVPMKVSQSPQSELPLNEKEELEQLRKENRVLKSRLK
REELGHQAYKLLVELAEETYGIQIRKNSEAK

Gene Nucleotide Sequence:  Sequence Viewer
TTGACAGTTGGCGGGATGCAACCAGTATCCATTATGGGCAAACATTTAAA
CAACTTTGAACGCCTTAGCATCCTTGAGGATTACCTCTCGGGGTCAGATA
GCAAAGTAGCCATTGAGCAGAAATATGGTCTAAGTCATGGTCTCATTCGC
TCTTGGCTTCGTAAATTTGGACTCGAAGATAAAGTTCATCCAGTCCCAAT
GAAAGTGTCCCAATCCCCCCAGAGTGAGCTACCCCTGAACGAAAAAGAAG
AATTAGAGCAGCTACGTAAAGAAAATCGTGTCCTCAAGAGTCGTCTCAAG
CGAGAAGAACTAGGGCATCAAGCCTACAAGCTACTTGTAGAGTTGGCAGA
AGAAACCTACGGCATTCAGATACGAAAAAACTCCGAAGCCAAG

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