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Record: 1 of 1 MiniMap

LANL Gene ID: PG1260GenBank Locus Tag: PG1439DNA Molecule Name: 1 Genomic Island ID: 12 GenBank ID: 34541112 Gene Name: Definition: hypothetical protein Cellular Location: Inner membrane, Cytoplasm [Evidence] Gene Start: 1526753 Gene Stop: 1524681 Gene Length: 2073 Molecular Weight*: 80632 pI*: 5.60 Net Charge*: -15.46 EC: Functional Class: Hypothetical Gene Ontology: Pathway: pathway table Primary Evidence: Zhang Y, Wang T, Chen W, Yilmaz O, Park Y, Jung IY, Hackett M, Lamont RJ. Differential protein expression by Porphyromonas gingivalis in response to secreted epithelial cell components. Proteomics. 2005 Jan;5(1):198-211. PMID: 15619293 Comment: TIGR ID: PG1439 Human Oral Microbiome Database: View in HOMD Genome Viewer Blast Summary: PSI-Blast Search This sequence corresponds to 34397428 in Genbank. Top Blast Hits: Updated monthly Click here to view the entire PsiBlast results. gi|34541112|ref|NP_905591.1| hypothetical protein PG1439 [P... 1360 0.0 InterPro Summary: InterProScan

noIPR
unintegrated

unintegrated
signalp		signal-peptide
tmhmm		transmembrane_regions

COGS Summary: COGS Search No hit to the COGs database. Blocks Summary: Blocks Search No significant hit to the Blocks database. ProDom Summary: Protein Domain Search No significant hit to the ProDom database. Paralogs: Local Blast Search No paralogs found in P. gingivalis. Pfam Summary: Pfam Search No significant hits to the Pfam 11.0 database Structural Feature(s): Feature Type Start Stop uncleavable signal 1 24 transmembrane 13 29 transmembrane 58 76 transmembrane 59 75 transmembrane 83 102 transmembrane 87 103 Top PDB Hits: -46% similar to PDB:1TJC Crystal structure of peptide-substrate-binding domain of human type I collagen prolyl 4-hydroxylase (E_value = ); -64% similar to PDB:1PY1 Complex of GGA1-VHS domain and beta-secretase C-terminal phosphopeptide (E_value = ); -43% similar to PDB:1IRX Crystal structure of class I lysyl-tRNA synthetase (E_value = ); -42% similar to PDB:1SDD Crystal Structure of Bovine Factor Vai (E_value = ); -52% similar to PDB:1WR8 Crystal structure of hypothetical protein PH1421 from Pyrococcus horikoshii. (E_value = ); Gene Protein Sequence: MIFDFTNYTFSGLLSILASLYGVGYPLIMQSIGRIYTQYDSTLLANRFTK ETIYRVFQVLLILNLLFAVSTPFLLHAEWWNIGFVTIQAILLVLLMGFTF LLFQLMIKYENAGELLRHIEGGQIDKSNIMDIFDLAIYADSKNNHQLYID AMSSVFSYITVQQGDDYKKQNDNEILPPVVYDENVVAILRKIKGFIREDD GHHLLHRNNDIVSVLYNQLSKSRISLQIHQMMWFLLNEAITYNNHSWFKQ YWQFADSYSSLRYRFVANDTLRQDKKEFMLRHVMIGTLLLHNERYKWLND IFLYTHSEPEYYGLIPSTFIEIVEMLENIDSICTVPAFQQQNFYFANEMG GVNDEKFVFRKAVKCLSLLVIRLWTLQHRNLDNINSLFHIPSSPILIEDA ERAATLMDMMKDDVEEFYSKDIFQLIPRLLPVNKADILSLLLDYRDQCLD TKETHQNHPDVDYEKFSKLKEEIMSFVNNFNIALPQNNIIAEVDNLITKE GVVETKERLETLYYSPYKNIGLCKPPLLTNFMFDLYRMYLRVLGSMKKLS SYKISRSQIQGFLEIIGYNDLDYAIITTNKIQHLKKTHINLCAGVRSFEF FIMRKNDIPHVSFGEVQRDDLKIIADSNISSNIDSFIDCHEGCFDLILAT KMVVHIKEKIDGVVYVSVNEEYPEQEKPITINATLAELFGN Gene Nucleotide Sequence: Sequence Viewer ATGATTTTTGATTTTACTAATTATACATTCAGCGGATTGCTTTCCATTTT AGCATCTCTTTATGGAGTTGGCTATCCTTTGATAATGCAGAGTATCGGTA GGATATATACACAATATGATTCTACATTACTTGCGAATAGATTTACGAAA GAGACAATATATAGGGTGTTCCAAGTCCTTCTTATTCTGAATTTGTTATT TGCCGTATCTACCCCTTTTCTGCTACATGCAGAATGGTGGAATATAGGTT TTGTGACTATCCAAGCCATTCTTTTGGTGTTACTGATGGGATTTACTTTT CTACTATTCCAGTTAATGATAAAGTACGAGAACGCGGGAGAACTTCTCAG GCACATAGAAGGAGGACAAATTGACAAATCCAACATTATGGATATTTTTG ACTTGGCAATCTATGCAGATTCTAAAAACAATCATCAACTTTATATTGAT GCCATGTCAAGTGTGTTTTCATACATAACTGTACAACAGGGTGATGATTA TAAGAAACAGAATGATAATGAGATTTTACCGCCAGTTGTATATGATGAGA ATGTTGTTGCAATACTTAGAAAAATAAAAGGGTTCATCAGAGAGGATGAT GGACATCATCTGTTACATCGAAATAATGATATAGTATCAGTCTTATATAA CCAGTTGTCAAAGTCAAGAATTAGCCTGCAAATTCATCAAATGATGTGGT TTTTACTAAATGAGGCTATAACATATAATAACCACTCTTGGTTCAAACAA TATTGGCAGTTCGCTGATAGTTATTCAAGTCTACGGTATCGCTTTGTAGC TAATGATACATTAAGACAAGACAAAAAAGAATTTATGCTCCGTCATGTAA TGATAGGAACATTACTACTCCATAATGAAAGATATAAATGGCTCAATGAT ATATTCCTTTATACACATTCAGAGCCAGAATACTATGGCTTAATTCCAAG CACATTTATAGAGATTGTTGAGATGCTTGAAAACATAGATTCGATATGTA CTGTTCCTGCTTTTCAACAGCAAAATTTCTATTTTGCAAACGAAATGGGA GGTGTAAATGATGAAAAATTTGTATTTAGGAAAGCGGTAAAGTGTCTGTC TTTACTTGTAATTAGATTATGGACTTTACAGCATCGGAATTTAGACAATA TAAATTCTCTCTTTCATATACCATCCTCTCCAATATTGATAGAAGATGCT GAAAGAGCAGCAACTTTAATGGATATGATGAAAGATGATGTAGAGGAGTT TTATAGTAAAGATATTTTTCAATTGATTCCACGATTACTCCCTGTTAATA AGGCAGATATATTATCCTTACTTTTGGATTATCGGGACCAATGCTTAGAT ACCAAAGAAACCCATCAAAATCATCCTGACGTGGATTATGAAAAATTCTC CAAACTAAAAGAAGAGATAATGTCTTTTGTGAATAACTTTAATATCGCAC TTCCACAAAATAATATCATAGCAGAAGTTGATAATCTCATAACAAAGGAA GGTGTTGTAGAAACAAAAGAAAGATTGGAAACCCTTTATTACTCTCCATA TAAAAATATTGGGCTTTGTAAGCCTCCTCTTCTGACGAATTTTATGTTTG ATTTATATCGTATGTACCTGCGAGTGCTTGGCAGTATGAAAAAGTTATCG TCGTATAAAATAAGTCGGAGTCAAATACAGGGATTTCTGGAAATTATTGG ATATAATGATTTAGATTATGCAATAATTACAACAAACAAAATTCAACACC TAAAAAAAACTCATATTAACTTATGTGCAGGAGTTCGATCATTTGAGTTC TTCATTATGAGAAAAAATGATATTCCACATGTATCATTTGGTGAAGTTCA AAGAGATGATTTGAAAATAATAGCTGATAGTAATATTAGTTCAAATATAG ATTCTTTCATAGATTGTCATGAGGGGTGTTTTGATCTTATTCTGGCAACG AAGATGGTTGTGCATATAAAAGAAAAAATAGATGGTGTGGTTTATGTTTC TGTAAATGAAGAATATCCAGAACAAGAGAAACCAATTACTATCAATGCCA CTTTAGCCGAGTTGTTTGGTAAT Los Alamos National Laboratory • Est 1943 Operated by Los Alamos National Security, LLC for the U.S. Department of Energy's National Nuclear Security Administration Inside | © Copyright 2006 LANS LLC All rights reserved | Disclaimer/Privacy

`Feature Type`	`Start`	`Stop`
`uncleavable signal`	`1`	`24`
`transmembrane`	`13`	`29`
`transmembrane`	`58`	`76`
`transmembrane`	`59`	`75`
`transmembrane`	`83`	`102`
`transmembrane`	`87`	`103`