LANL Gene ID: PG1261
GenBank Locus Tag: PG1440
DNA Molecule Name:
1
Genomic Island ID:
12
GenBank ID:
34541113
Gene Name:
Definition:
hypothetical protein
Cellular Location:
Cytoplasm, Inner membrane [Evidence]
Gene Start:
1527360
Gene Stop:
1526746
Gene Length:
615
Molecular Weight*:
24481
pI*:
10.60
Net Charge*:
12.92
EC:
Functional Class:
Hypothetical
Gene Ontology:
Pathway: pathway table
Primary Evidence:
Zhang Y, Wang T, Chen W, Yilmaz O, Park Y, Jung IY, Hackett M, Lamont RJ.
Differential protein expression by Porphyromonas gingivalis in response to secreted epithelial cell components.
Proteomics. 2005 Jan;5(1):198-211.
PMID: 15619293
Comment:
TIGR ID: PG1440
Proteomic Data: Proteomic Data Search
| TIGR Annotation | hypothetical protein, GroupK (hypothetical proteins) | ||||||||
| ORF # | PG-PP/PG-PPC1 | PG-PP/PG-PPC2 | |||||||
| Spectral Count | Peptide Intensity | Spectral Count | Peptide Intensity | ||||||
| Pro | qVal | Pro | qVal | Pro | qVal | Pro | qVal | ||
| TIGR | PG1440 | -0.55 | 0.27 | ||||||
| LANL | PG1261 | 0.68 | 0.01 | ||||||
| Consensus |  | SP1 |  | IP1 | | SP2 | | IP2 | |
Human Oral Microbiome Database:
View in HOMD Genome Viewer
Blast Summary: PSI-Blast Search
This sequence corresponds to 34397429 in Genbank.
Top Blast Hits: Updated monthly
Click here to view the entire PsiBlast results.
InterPro Summary: InterProScan
| noIPR unintegrated |
| ||||||||||
![[1-46]? NA signalp signal-peptide](http://www.ebi.ac.uk/InterProScan/images/S.gif){kind=small}
![[27-49]? NA tmhmm transmembrane_regions](http://www.ebi.ac.uk/InterProScan/images/T.gif){kind=small}
COGS Summary: COGS Search
No hit to the COGs database.
Blocks Summary: Blocks Search
No significant hit to the Blocks database.
ProDom Summary: Protein Domain Search
No significant hit to the ProDom database.
Paralogs: Local Blast Search
No paralogs found in P. gingivalis.
Pfam Summary: Pfam Search
No significant hits to the Pfam 11.0 database
Structural Feature(s):
| Feature Type | Start | Stop |
| transmembrane | ||
| transmembrane | ||
| transmembrane | ||
| transmembrane | ||
| coil-coil |
Top PDB Hits:
-67% similar to PDB:2FB6 Conserved hypothetical protein BT1422 from Bacteroides thetaiotaomicron. (E_value = );
-57% similar to PDB:1C1G CRYSTAL STRUCTURE OF TROPOMYOSIN AT 7 ANGSTROMS RESOLUTION IN THE SPERMINE-INDUCED CRYSTAL FORM (E_value = );
-64% similar to PDB:1NT2 CRYSTAL STRUCTURE OF FIBRILLARIN/NOP5P COMPLEX (E_value = );
-57% similar to PDB:2D3E Crystal structure of the C-Terminal fragment of rabbit skeletal alpha-tropomyosin (E_value = );
-57% similar to PDB:2TMA TROPOMYOSIN CRYSTAL STRUCTURE AND MUSCLE REGULATION. APPENDIX. CONSTRUCTION OF AN ATOMIC MODEL FOR TROPOMYOSIN AND IMPLICATIONS FOR INTERACTIONS WITH ACTIN (E_value = );
Gene Protein Sequence:
LRTKIRLLHRRYLLNVKRNRNSWRKSYMNSFGLPLIVIIALISIILIYIR
KLRDKSDITPDIKQDVETGEIDDLFNNTIEEVNTHFPQKIKQKEFRVILK
NKGWWNRNNPFIWGLCAISFIAILMLVLSSVAHRKYSTQQEISIQKEHQK
ILYKDSMQNNKDSMKNEQIELISSELSDIDKTIRETNRIIRRVEKQIKDI
KENDF
Gene Nucleotide Sequence: Sequence Viewer
TTGCGAACTAAAATACGCCTTTTGCATAGAAGATATTTACTGAACGTGAA
GAGAAATAGAAATAGTTGGAGAAAATCATATATGAATTCATTTGGTTTAC
CCCTTATAGTAATAATTGCCTTGATTAGCATTATTCTAATTTACATTCGT
AAATTGAGAGATAAGAGCGATATTACACCCGACATCAAACAAGATGTTGA
GACGGGAGAAATAGACGATTTATTTAATAATACAATAGAAGAAGTAAACA
CTCACTTCCCTCAAAAGATAAAGCAAAAAGAATTTAGGGTAATACTAAAG
AACAAGGGTTGGTGGAATAGGAACAATCCTTTTATTTGGGGGCTGTGTGC
TATTTCATTCATAGCTATTCTAATGCTTGTTTTGTCGAGTGTTGCTCACA
GGAAATATAGCACTCAACAAGAAATATCTATTCAGAAAGAACACCAAAAG
ATTTTATACAAAGACTCTATGCAAAATAACAAAGACTCTATGAAAAATGA
ACAAATTGAACTTATATCTTCTGAACTCTCTGATATTGATAAGACTATCA
GGGAGACAAATAGAATAATCCGTAGAGTAGAAAAACAAATAAAAGACATT
AAAGAAAATGATTTT