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Porphyromonas gingivalis Search Results

Record: 1 of 1  
MiniMap IGR1096 IGR1089 IGR1097 IGR1093 IGR1088 IGR1091 IGR1095 IGR1094 IGR1090 IGR1092 IGR1098 PG1268 rteC, - PG1264 PG1270 PG1267.1 pobR, - PG1266 PG1271 PG1272 PG1265 PG1269 PG1263 PG1273 ISPg1, - PG1267 PG1268 rteC, - PG1264 PG1270 PG1267.1 pobR, - PG1266 PG1271 PG1272 PG1265 PG1269 PG1263 PG1273 ISPg1, - PG1267 Type: IS element, Name: ISPg1 - 2 rteC, - PG1264 PG1270 PG1267.1 pobR, - PG1266 PG1271 PG1272 PG1265 PG1264.1 PG1264.1 PG1268 PG1269 PG1263 PG1273 ISPg1, - PG1267


LANL Gene ID: PG1267.1

GenBank Locus Tag: PG1449

DNA Molecule Name:
1  

Genomic Island ID:
12

GenBank ID:
34541120

 Gene Name:


 Definition:
conserved hypothetical protein

 Cellular Location:
Inner membrane, Cytoplasm [Evidence]

 Gene Start:
1534355

Gene Stop:
1533678

Gene Length:
678

Molecular Weight*:
27131

pI*:


Net Charge*:


EC:
 

 Functional Class:
Unknown; Conserved hypothetical  

 Gene Ontology:

Pathway: pathway table

 Comment:
TIGR ID: PG1449

 Human Oral Microbiome Database:
View in HOMD Genome Viewer

 Blast Summary:  PSI-Blast Search
One significant hit in gapped BLAST; e.g. residues 8-170 are 42% similar to gb|AAF96387.1| hypothetical protein of Vibrio cholerae.

 Top Blast Hits:  Updated monthly
Click here to view the entire PsiBlast results.
 gi|34540601|ref|NP_905080.1|  hypothetical protein PG0824 [P...   407   e-112
 gi|153803739|ref|ZP_01958325.1|  conserved hypothetical prot...   119   1e-25
 gi|15601244|ref|NP_232875.1|  hypothetical protein VCA0483 [...   117   5e-25
 gi|153803220|ref|ZP_01957806.1|  conserved hypothetical prot...   112   2e-23
 gi|157084884|gb|ABV14562.1|  hypothetical protein CKO_03482 ...   108   2e-22
 gi|46581244|ref|YP_012052.1|  hypothetical protein DVU2840 [...    99   2e-19
 gi|21674475|ref|NP_662540.1|  hypothetical protein CT1657 [C...    80   9e-14


InterPro Summary:  InterProScan

noIPR
unintegrated
unintegrated
tmhmm [51-71]? NA tmhmm transmembrane_regions[81-101]? NA tmhmm transmembrane_regions[154-176]? NA tmhmm transmembrane_regions[186-206]? NA tmhmm transmembrane_regions transmembrane_regions


COGS Summary:  COGS Search
No hit to the COGs database.
Blocks Summary:  Blocks Search
No significant hit to the Blocks database.

 ProDom Summary:  Protein Domain Search
No significant hit to the ProDom database.

Paralogs:  Local Blast Search
PG1267.1 is identical to PG0739.1, a conserved hypothetical protein.

Pfam Summary:  Pfam Search
No significant hits to the Pfam 11.0 database

 Structural Feature(s):
Feature Type  Start  Stop
No predicted structural features.  
  
transmembrane  
54  
70
transmembrane  
84  
100
transmembrane  
154  
170
transmembrane  
187  
203

Top PDB Hits:
No significant hits to the PDB database (E-value < E-10).

Gene Protein Sequence:
LKLQFISQYDSKLRYICMIELENIKERKRRLAFEKAHEIRKFEIELYWKR
TTYFWAFIAFSFGAYIAIVSSESKEFTNRENYAFVITCIGFIFSLSWYLV
NRASKHWQTNWEVIIDDLEDEFTGDLMKRHIKNNNKWYELTLSYRYSVSR
INQIVSLFITIVWVILMCFSGYQILSISTFSLSGNWMFPIFFIVTIAFFV
ILVKWGKSEKPKEKVTLNRKSSKECC

Gene Nucleotide Sequence:  Sequence Viewer
TTGAAGTTACAATTTATCAGTCAATATGATTCTAAGTTAAGATATATATG
TATGATTGAATTAGAAAACATCAAAGAAAGGAAGAGAAGACTTGCTTTTG
AAAAAGCTCACGAGATTAGGAAGTTTGAAATTGAACTTTATTGGAAACGA
ACTACTTATTTTTGGGCATTTATAGCCTTTTCCTTTGGAGCGTATATTGC
TATTGTATCTTCCGAAAGCAAAGAGTTTACCAATAGAGAAAACTACGCTT
TCGTTATAACATGTATTGGCTTTATCTTTTCTCTAAGTTGGTATCTCGTA
AATAGAGCCAGCAAGCATTGGCAAACCAATTGGGAGGTAATTATAGATGA
TTTAGAAGATGAATTCACAGGAGATTTGATGAAAAGACATATAAAGAATA
ATAACAAATGGTATGAATTGACATTATCTTATAGATATTCTGTTTCAAGG
ATCAACCAGATTGTAAGCCTCTTTATTACCATTGTATGGGTTATCTTAAT
GTGTTTTTCTGGTTATCAAATTCTCAGTATTTCCACATTCTCTTTATCAG
GAAACTGGATGTTTCCTATATTCTTTATTGTCACAATCGCTTTCTTTGTT
ATTCTTGTAAAATGGGGAAAGTCTGAAAAGCCAAAGGAAAAGGTTACTCT
TAATCGAAAATCGTCCAAAGAATGTTGT

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