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Porphyromonas gingivalis Search Results

Record: 1 of 1  
MiniMap IGR1109 IGR1104 IGR1108 IGR1107 IGR1105 IGR1106 IGR1103 traQ, - PG1287 PG1283 traN, - PG1289 PG1284 PG1285 PG1281 PG1282 PG1280 PG1286 traQ, - PG1287 PG1283 traN, - PG1289 PG1284 PG1285 PG1281 PG1282 PG1280 PG1286 traQ, - PG1287 PG1283 traN, - PG1289 PG1284 traO, - PG1288 traO, - PG1288 PG1281 PG1282 PG1280 PG1286 PG1285


LANL Gene ID: PG1284

GenBank Locus Tag: PG1469

DNA Molecule Name:
1  

GenBank ID:
34541136

Gene Name:


Definition:
conserved hypothetical protein

Cellular Location:
Cytoplasm [Evidence]

Gene Start:
1548091

Gene Stop:
1545086

Gene Length:
3006

Molecular Weight*:
116577

pI*:
8.50

Net Charge*:
12.59

EC:
 

Functional Class:
Unknown; Conserved hypothetical  

Gene Ontology:
Biological process
  GO:0006304    DNA modification
  GO:0006306    DNA methylation
  GO:0032259    methylation

Molecular function
  GO:0003676    nucleic acid binding
  GO:0003677    DNA binding
  GO:0003824    catalytic activity
  GO:0008168    methyltransferase activity
  GO:0008170    N-methyltransferase activity


Pathway: pathway table

Comment:
TIGR ID: PG1469

Human Oral Microbiome Database:
View in HOMD Genome Viewer

Blast Summary:  PSI-Blast Search
Numerous weak hits in gapped BLAST; e.g. residues 160-433 are 24% similar to emb|CAC12457.1| type IV site-specific deoxyribonuclease Eco57I related protein of Thermoplasma acidophilum, residues 291-614 are 23% similar to gb|AAK08958.1|AF306668_3 DNA methyltransferase BseMII of Bacillus stearothermophilus, residues 303-409 are 30% similar to emb|CAB45593.1| putative DNA methylase of Streptomyces coelicolor.

Top Blast Hits:  Updated monthly
Click here to view the entire PsiBlast results.
 gi|34541136|ref|NP_905615.1|  type I restriction-modificatio...  1982   0.0  
 gi|150024141|ref|YP_001294967.1|  Probable type I endonuclea...   741   0.0  
 gi|124005662|ref|ZP_01690501.1|  type I restriction-modifica...   696   0.0  
 gi|110634699|ref|YP_674907.1|  N-6 DNA methylase [Mesorhizob...   238   2e-60
 gi|126659143|ref|ZP_01730282.1|  type I restriction-modifica...   227   3e-57
 gi|119490856|ref|ZP_01623139.1|  type I restriction-modifica...   222   1e-55
 gi|148262245|ref|YP_001228951.1|  hypothetical protein Gura_...   219   6e-55
 gi|60680772|ref|YP_210916.1|  hypothetical protein BF1252 [B...   200   5e-49
 gi|146280356|ref|YP_001170511.1|  N-6 DNA methylase [Rhodoba...   176   1e-41
 gi|121542154|ref|ZP_01673891.1|  hypothetical protein DoleDR...   169   1e-39


InterPro Summary:  InterProScan

InterPro
IPR002052
Domain
N-6 Adenine-specific DNA methylase
PS00092 [465-471]? 0.0 PS00092 N6_MTASE N6_MTASE
InterPro
IPR002296
Family
N6 adenine-specific DNA methyltransferase, N12 class
PR00507 [314-330]T 1.3E-12 PR00507 N12N6MTFRASE[343-357]T 1.3E-12 PR00507 N12N6MTFRASE[462-474]T 1.3E-12 PR00507 N12N6MTFRASE N12N6MTFRASE
InterPro
IPR003356
Domain
N-6 DNA methylase
PF02384 [291-359]T 1.69999922284051E-8 PF02384 N6_Mtase N6_Mtase
InterPro
IPR011639
Domain
Restriction endonuclease, Eco57I
PF07669 [461-576]T 1.4999999817006502 PF07669 Eco57I Eco57I
noIPR
unintegrated
unintegrated
G3DSA:3.40.50.150 [316-577]T 7.99999145876698E-20 G3DSA:3.40.50.150 G3DSA:3.40.50.150 G3DSA:3.40.50.150
SSF53335 [316-595]T 6.6E-24 SSF53335 SSF53335 SSF53335


COGS Summary:  COGS Search
BeTs to 3 clades of COG1002
COG name: Type II restriction enzyme, methylase subunits
Functional Class: L
The phylogenetic pattern of COG1002 is -m-------b--uj--O----
Number of proteins in this genome belonging to this COG is 2
Blocks Summary:  Blocks Search
No significant hit to the Blocks database.

 ProDom Summary:  Protein Domain Search
Residues 294-406 are 33% similar to a (METHYLTRANSFERASE RESTRICTION PROTEIN TRANSFERASE ENZYME) protein domain (PD002294 which is seen in YZ42_METJA.

Residues 296-490 are 26% similar to a (METHYLASE METHYLTRANSFERASE) protein domain (PD128716 which is seen in P72289_RHILE.


Paralogs:  Local Blast Search
Residues 294-409 are 25% similar to PG0772, a probable type II DNA modification enzyme (methyltransferase).

Pfam Summary:  Pfam Search
No significant hits to the Pfam 11.0 database

 Structural Feature(s):
Feature Type  Start  Stop
non-globular  
782  
893

Top PDB Hits:
No significant hits to the PDB database (E-value < E-10).

Gene Protein Sequence:
MSTNFFYKKLGYEHLVRCSGITTSNPEYQELGKIGADKVYFSGDFPAILF
KEVEAFDIYALTQIAQIQHKAWNYRKIMFLFVVSDTEIRIYNCHEKPRFI
KSDSDYEKELSPYQIFRSTKEDEASLKILVEIFSRIGVDSGLLWTSDYNL
RDEINVQKRIDRYLVESLLRTADALKEDITDTNIIHGLLMRSLFILYLED
KGAAKEAGLYREIRKDAESYFDILDDVDATYKLFAKLQDHFNGNVFPIIE
DEQSKVKKEHLEKIKKCFIDGDISGQPKLFENWRIFKFDFIQIELLSEVY
ENFLGELDTKKEKGQFYTPYTLVELILNDKLPIKNETNYNVKILDPACGS
GIFLVESYKRLIRRWKNKNPEKVITFKELNDILVKNIFGIEIDPLAIKVT
AFSLYLALVEHLNPKKLWIDKTNKFPYLIDNPNDISIKEKKGKNLWCRDT
IGEVNPDDFEKVNLVIGNPPFGTKKLSKSIMDYCVKYNFGKEMVLPFLHK
SIEFCPDGEIALIFNTKVLTNTKKTYQNFRHWLLNENYVEKLYNLSIFRK
SPRNFGGQLFTSAIGPICIIYFQAKTPPKASNTIEYWAPKTYVKSNLIDG
VLVDSTDIKFLPRTECQIPNSKIWKIAMWGNIADYNLIKRLSNTYPSLQR
SFKDKVVYGVGLETSVPCKKTDENIKLIPHHTSKTIKRFYTPINFGTRIT
NSFFRRLGYVDAYRAPHLLLNEGVQKNKLTASFLDYDCSYFKGIVGIISE
KSDENILKLTCAFLNSSFAQYYAFMTTSSWGIERDVVKHQELFTIPFIIE
NFTEQKKQTIISLLDSVIKKQSQISFGDYLELEDNINTILLDDLTEKDRI
IITDSLRQIDLFQKGSKSKLLRHTTNNENLAYAEILKQELNDFYSGTGHG
INIAVYDVQRHDPLNLVTLHFCKKEKPIEIKQTNELSSLLKELDKYSIQE
KGKNIYVQKQFRYYDRDKIYLIKPNQKRFWTRSQAIDDALSLIVEIANLG
TK

Gene Nucleotide Sequence:  Sequence Viewer
ATGAGTACAAATTTTTTCTATAAGAAATTAGGCTATGAGCATTTAGTGAG
ATGTTCAGGAATAACGACCTCTAATCCTGAATACCAGGAGTTGGGAAAAA
TTGGTGCAGATAAGGTTTATTTTTCAGGGGATTTTCCTGCCATTCTTTTT
AAAGAAGTCGAGGCATTCGATATATACGCTTTAACACAAATTGCCCAAAT
TCAACATAAAGCATGGAACTATCGAAAAATCATGTTTCTTTTTGTCGTAT
CAGACACTGAGATTCGGATTTACAATTGTCACGAAAAGCCCAGGTTCATA
AAGTCTGATTCTGACTATGAAAAGGAATTAAGCCCCTATCAGATTTTTAG
AAGCACAAAAGAAGATGAGGCAAGTTTAAAAATTTTAGTTGAGATTTTTT
CTCGCATAGGCGTTGACAGTGGTTTACTATGGACAAGCGACTACAATCTT
CGTGATGAAATTAATGTTCAGAAGAGAATAGATAGGTATTTAGTAGAAAG
TTTGCTGAGAACGGCCGATGCATTAAAAGAGGATATTACAGACACTAATA
TTATTCATGGATTACTCATGCGCTCTCTTTTTATCTTATATCTTGAAGAT
AAAGGGGCTGCGAAAGAAGCAGGGTTATACAGAGAAATCAGGAAGGATGC
GGAAAGTTATTTCGATATTTTAGATGATGTAGATGCTACATATAAGTTGT
TTGCTAAATTGCAAGACCATTTTAATGGTAACGTTTTCCCAATAATTGAA
GATGAACAATCGAAAGTAAAAAAAGAACACTTAGAAAAAATAAAAAAATG
TTTCATCGATGGAGATATTTCAGGACAACCGAAGCTGTTTGAAAATTGGA
GAATATTCAAATTTGATTTTATCCAAATAGAATTATTGAGTGAGGTATAC
GAAAACTTTCTTGGCGAACTTGATACAAAAAAAGAAAAAGGACAATTCTA
TACTCCATATACTTTGGTAGAATTAATTCTAAACGACAAATTGCCAATCA
AAAATGAAACAAATTACAATGTTAAAATTTTAGATCCGGCTTGTGGTTCT
GGAATTTTCTTAGTCGAAAGTTATAAAAGACTTATTAGGAGATGGAAAAA
TAAAAATCCAGAGAAGGTCATAACCTTCAAAGAACTTAATGATATACTTG
TAAAAAACATCTTTGGAATCGAAATAGATCCATTAGCTATTAAAGTAACA
GCTTTCAGCCTATATTTGGCATTAGTTGAGCATCTTAACCCCAAGAAACT
CTGGATAGACAAAACCAATAAATTCCCTTATTTGATAGATAATCCTAACG
ATATTTCAATTAAAGAAAAAAAAGGAAAAAATCTGTGGTGTCGGGATACT
ATTGGGGAAGTGAATCCTGATGATTTTGAAAAGGTGAATTTGGTTATTGG
GAACCCACCTTTTGGGACTAAGAAATTGTCAAAATCGATAATGGACTATT
GTGTCAAATATAATTTTGGCAAAGAGATGGTTTTACCATTTCTACATAAA
TCCATTGAGTTTTGTCCTGATGGAGAAATTGCTTTAATTTTTAATACAAA
AGTGCTTACCAACACAAAAAAAACTTACCAGAATTTTAGGCACTGGCTAT
TAAATGAGAACTATGTAGAAAAACTCTATAATTTATCTATATTTAGGAAA
TCGCCGAGAAACTTTGGAGGACAACTATTTACTTCTGCAATAGGTCCAAT
ATGCATTATCTATTTTCAAGCAAAAACACCACCTAAGGCGTCTAATACAA
TTGAGTATTGGGCTCCTAAGACCTACGTTAAATCCAACTTAATTGATGGG
GTATTAGTTGATTCTACAGATATCAAATTTCTCCCACGAACGGAGTGCCA
AATTCCAAACAGTAAAATATGGAAAATAGCCATGTGGGGCAATATTGCAG
ATTATAATCTAATAAAACGCCTATCCAACACCTATCCTTCTTTACAAAGG
AGTTTTAAAGATAAAGTTGTCTATGGTGTTGGATTAGAAACAAGTGTTCC
TTGCAAAAAAACAGATGAAAATATCAAATTAATTCCTCATCACACATCAA
AAACAATCAAACGTTTTTATACACCTATTAACTTTGGTACTAGAATAACA
AATTCCTTTTTCAGAAGATTAGGATATGTTGATGCATATAGGGCTCCTCA
CCTATTATTGAATGAGGGAGTCCAGAAAAATAAACTCACGGCTTCTTTTT
TGGATTACGATTGTTCTTATTTTAAGGGAATCGTAGGTATTATTTCCGAA
AAATCTGATGAAAATATTTTGAAACTAACTTGCGCATTTTTAAATTCATC
ATTTGCTCAATATTATGCTTTTATGACAACTTCTTCATGGGGTATTGAGA
GAGATGTTGTTAAACATCAAGAATTATTCACCATTCCTTTCATCATAGAA
AACTTCACCGAGCAAAAAAAGCAAACAATTATTTCATTATTGGATAGTGT
TATTAAGAAGCAATCCCAAATATCTTTTGGGGATTATTTGGAGCTTGAAG
ATAATATTAATACCATTCTTCTCGATGATTTAACAGAAAAAGATAGAATT
ATTATAACGGACTCTCTTCGACAGATAGACCTCTTCCAAAAAGGGAGTAA
ATCAAAGTTGCTAAGGCACACAACTAATAATGAAAATTTGGCCTATGCCG
AGATTTTAAAACAAGAGCTGAATGATTTTTATTCCGGCACTGGCCATGGA
ATTAATATAGCTGTATATGATGTGCAGCGACATGACCCTTTAAACTTGGT
GACATTGCATTTCTGCAAAAAAGAAAAACCTATTGAAATAAAGCAGACGA
ATGAACTATCTTCCTTGCTTAAAGAATTAGACAAGTATTCTATTCAAGAA
AAAGGTAAAAATATATATGTACAAAAACAATTCAGATATTACGATAGGGA
TAAAATATATTTGATTAAGCCAAATCAGAAGCGTTTTTGGACACGTTCAC
AGGCTATTGATGATGCCCTCTCGCTCATCGTTGAAATTGCAAATTTGGGA
ACAAAA

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