Search Results

Record: 1 of 1 MiniMap

LANL Gene ID: PG1328GenBank Locus Tag: PG1518DNA Molecule Name: 1 Genomic Island ID: 14 GenBank ID: Gene Name: ISPg3 Definition: ISPg3-related (IS195-related) transposase Cellular Location: Cytoplasm [Evidence] Gene Start: 1595559 Gene Stop: 1594942 Gene Length: 618 Molecular Weight*: 23724 pI*: 10.40 Net Charge*: 12.96 EC: Functional Class: Transposon functions Gene Ontology: Pathway: pathway table Primary Evidence: Lewis JP, Macrina FL, IS195, an insertion sequence-like element associated with protease genes in Porphyromonas gingivalis. Infect Immun 1998 Jul;66(7):3035-42, PubMed: 9632563. Secondary Evidence: Kehrenberg C, Werckenthin C, Schwarz S, Tn5706, a transposon-like element from Pasteurella multocida mediating tetracycline resistance. Antimicrob Agents Chemother 1998 Aug;42(8):2116-8, PubMed: 9687418. Comment: TIGR ID: PG1518 Human Oral Microbiome Database: View in HOMD Genome Viewer Blast Summary: PSI-Blast Search PG1328 is very similar to the previously sequenced gb|AAC26596.1, a predicted ISPg3 (IS195) sequence in GenBANK. Residues 26-190 are 46% similar to a transposase from P.salmonis (AF184152). Top Blast Hits: Updated monthly Click here to view the entire PsiBlast results. gi|34540050|ref|NP_904529.1| ISPg3, transposase [Porphyromo... 182 1e-44 gi|34540105|ref|NP_904584.1| ISPg3, transposase [Porphyromo... 182 1e-44 gi|3323385|gb|AAC26596.1| putative protease [Porphyromonas ... 181 2e-44 gi|34540580|ref|NP_905059.1| ISPg3, transposase [Porphyromo... 181 2e-44 gi|34540773|ref|NP_905252.1| ISPg3, transposase [Porphyromo... 180 5e-44 gi|61652425|gb|AAX47722.1| transposase [Porphyromonas gingi... 179 1e-43 gi|34540967|ref|NP_905446.1| ISPg3, transposase [Porphyromo... 174 3e-42 gi|150009840|ref|YP_001304583.1| putative transposase [Para... 152 8e-36 gi|150002628|ref|YP_001297372.1| putative transposase [Bact... 151 2e-35 gi|119943862|ref|YP_941542.1| transposase, IS4 family prote... 148 2e-34 InterPro Summary: InterProScan No hits reported. COGS Summary: COGS Search No hit to the COGs database. Blocks Summary: Blocks Search No significant hit to the Blocks database. ProDom Summary: Protein Domain Search Residues 127-194 are 50% similar to a (TRANSPOSASE PLASMID PROTEIN ELEMENT) protein domain (PD004652 which is seen in O87010_PORGI. Residues 67-124 are 58% similar to a (PROTEASE PUTATIVE TRANSPOSASE PLASMID) protein domain (PD190029 which is seen in O87010_PORGI. Paralogs: Local Blast Search PG1328 is similar to PG0236, PG0178, PG0718, PG0919, PG1115, PG1663, PG0273, all ISPg3-related transposases and fragments. Residues 1-194 are 48% similar to residues 11-203 of PG0236. Pfam Summary: Pfam Search No significant hits to the Pfam 11.0 database Structural Feature(s):

`Feature Type`	`Start`	`Stop`
`No predicted structural features.`

Top PDB Hits: No significant hits to the PDB database (E-value < E-10). Gene Protein Sequence: MLDEFSKNFDAEMQHHSLPTGFPKARRRRKVSLSDSEIMTILPVFHFGTF ANFKHDYLHFIKVHLHSEFPSAVSYNRFVELESRVFFKLMLFLKLYAFGK CTGISFVDSTMIPVCHNLRRYANKVFKGIATNGKGTMGWSHGFKLDFVCN DRREFITFCLTGANVDDRNPKVWQVPAKELYGKLFADKGYSRLNSLKASL MTASIL Gene Nucleotide Sequence: Sequence Viewer ATGCTTGATGAGTTTAGCAAGAATTTTGATGCGGAAATGCAACATCATTC GCTTCCTACCGGTTTCCCAAAGGCTCGCAGACGTCGTAAAGTCTCACTTA GTGACAGTGAGATTATGACTATTTTGCCGGTGTTTCATTTCGGAACCTTT GCTAATTTCAAACATGATTATTTGCATTTCATCAAAGTGCATTTGCACTC CGAGTTCCCTTCGGCTGTGTCGTACAATCGCTTTGTGGAGCTTGAAAGCC GCGTGTTCTTCAAACTCATGCTCTTTCTTAAACTCTATGCCTTTGGAAAA TGTACGGGCATCAGCTTTGTGGACAGCACTATGATTCCTGTCTGTCATAA TTTGAGGCGTTATGCCAATAAAGTATTCAAAGGGATAGCCACGAACGGAA AAGGTACCATGGGATGGAGTCACGGATTTAAACTTGATTTCGTATGCAAT GATCGTAGAGAGTTTATTACGTTTTGTCTTACAGGTGCTAACGTGGATGA CAGAAACCCGAAGGTCTGGCAGGTTCCGGCTAAAGAACTATACGGAAAAC TCTTTGCAGATAAGGGATATTCTCGCCTAAACTCTTTGAAAGCCTCTTTG ATGACGGCATCCATCTTG Los Alamos National Laboratory • Est 1943 Operated by Los Alamos National Security, LLC for the U.S. Department of Energy's National Nuclear Security Administration Inside | © Copyright 2006 LANS LLC All rights reserved | Disclaimer/Privacy