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Porphyromonas gingivalis Search Results

Record: 1 of 1  
MiniMap IGR1145 IGR1147 IGR1149 IGR1148 IGR1146 IGR1150 menF, - PG1334 PG1335 PG1340 PG1338.1 PG1339 PG1338 PG1336 PG1337 menF, - PG1334 PG1335 PG1340 PG1338.1 PG1339 PG1338 PG1336 PG1337 Type: tandem, Name: tan26 - 234 menF, - PG1334 PG1335 PG1340 PG1339 PG1338 PG1336 PG1337 PG1338.1


LANL Gene ID: PG1337

GenBank Locus Tag: PG1529

DNA Molecule Name:
1  

GenBank ID:
34541191

Gene Name:


Definition:
hypothetical protein

Cellular Location:
Cytoplasm [Evidence]

Gene Start:
1607378

Gene Stop:
1609513

Gene Length:
2136

Molecular Weight*:
82758

pI*:
5.10

Net Charge*:
-18.54

EC:
 

Functional Class:
Hypothetical  

Gene Ontology:

Pathway: pathway table

Primary Evidence:
Zhang Y, Wang T, Chen W, Yilmaz O, Park Y, Jung IY, Hackett M, Lamont RJ.
Differential protein expression by Porphyromonas gingivalis in response to secreted epithelial cell components.
Proteomics. 2005 Jan;5(1):198-211.
PMID: 15619293

Comment:
TIGR ID: PG1529

Proteomic Data: Proteomic Data Search
TIGR Annotationhypothetical protein, GroupK (hypothetical proteins)
ORF #PG-PP/PG-PPC1PG-PP/PG-PPC2
Spectral CountPeptide IntensitySpectral CountPeptide Intensity
ProqValProqValProqValProqVal
TIGRPG15292.330.0386.645.2e-053.030.00816.645.2e-05
LANLPG13375.0499.498.19168.28
ConsensusSP1IP1SP2IP2

Human Oral Microbiome Database:
View in HOMD Genome Viewer

 Blast Summary:  PSI-Blast Search
This sequence corresponds to 34397507 in Genbank.


 Top Blast Hits:  Updated monthly
Click here to view the entire PsiBlast results.
 gi|34541191|ref|NP_905670.1|  hypothetical protein PG1529 [P...  1385   0.0  
 gi|67154418|ref|ZP_00416163.1|  conserved hypothetical prote...   310   3e-82


InterPro Summary:  InterProScan

noIPR
unintegrated
unintegrated
SSF52540 [108-281]T 1.3000000000000002E-4 SSF52540 SSF52540 SSF52540


COGS Summary:  COGS Search
No hit to the COGs database.
Blocks Summary:  Blocks Search
No significant hit to the Blocks database.

 ProDom Summary:  Protein Domain Search
No significant hit to the ProDom database.

Paralogs:  Local Blast Search
No paralogs found in P.gingivalis.

Pfam Summary:  Pfam Search
No significant hits to the Pfam 11.0 database

 Structural Feature(s):
Feature Type  Start  Stop
No predicted structural features.  
  
transmembrane  
522  
538

Top PDB Hits:
No significant hits to the PDB database (E-value < E-10).

Gene Protein Sequence:
MDIDNIDRLFQEYGYDIKESTASYRVYLLNQGMYHGAEIQIMNDNTEETQ
IFERYSKLGYHAKKQRFRSIEEAESYLFKGFFNTQTTANDINRRYTEFAT
NQVKHYCGSDIKYQYISMPYSIYKEDAEDAINGTSDIISVIKETINRKGA
HLVVVEAAAGFGKTCTAYEIYKSFLDSSEYHKPIFTELSRNRDAKQFKYI
LWSEIDKEKDTTAKQELVVYNIKKGRIPLIIDGFDELLSKNIDPGKTGQL
NEFEQVETMLSTIGDLLTDEAKIILTSRKTAIFAGTEFGDWVDSYNGNFD
VIRFQLEKPNIKQWLSTERYEEIIGKNIPLESISNPVLLTYLRNIDQNNF
SDLLIYPETITDKYFEYLLNREKERQNLIIRWEDQMQIFENLARSFVEFD
ITGENRSFVKELIIEYNKSRLLDYKELMPTKQTLEELADTLTNHALLDRA
GNKDFISFINEFIFGYLLGKSIQKEPVAFLQKLAPLPNNLIELAVCSYKY
SSKKDKLELWNKLSVIKDKMSFYLAVITDCVLIGKIMGTYECKGLNSFHF
EDLKIFSEECKFTETSFVDSVFERCTFDVNAFHNVTFTGCKFIDCNMRDN
LSSCSHNIHFYGCDDYNNGFISSLKVMPTFDLQKQEDIDLEIEILGKFFK
VDGKSPKMKYISALRKEFEGQDLDVVFATFEILKKKGMILIDGNNSHISK
SGISYYHKNIQI

Gene Nucleotide Sequence:  Sequence Viewer
ATGGATATAGATAATATAGATCGGCTTTTCCAAGAATACGGATATGATAT
AAAAGAAAGTACCGCATCATATAGAGTATACTTGTTGAACCAAGGAATGT
ATCATGGTGCAGAAATCCAAATAATGAATGATAATACCGAGGAGACTCAG
ATATTTGAGCGCTACTCTAAATTGGGTTATCATGCAAAAAAACAAAGGTT
CAGATCTATCGAAGAAGCAGAGAGTTATTTGTTTAAAGGTTTTTTTAACA
CACAAACCACTGCAAATGACATTAATAGGAGATACACAGAATTTGCCACT
AATCAAGTAAAGCATTATTGCGGCAGTGACATTAAGTACCAGTACATCAG
TATGCCTTACTCTATTTACAAAGAAGATGCAGAAGATGCTATAAATGGGA
CTTCTGATATCATTTCTGTAATCAAAGAAACAATCAATAGAAAAGGTGCA
CATCTTGTTGTTGTAGAAGCAGCAGCTGGATTTGGTAAGACATGTACTGC
ATATGAGATATATAAATCTTTTTTAGATAGTAGCGAATATCACAAACCTA
TTTTTACTGAATTATCAAGAAACAGAGATGCCAAGCAGTTTAAATATATT
CTTTGGTCTGAGATTGATAAGGAAAAAGATACAACAGCCAAACAGGAACT
GGTTGTTTATAATATTAAAAAAGGAAGAATTCCTCTTATTATAGACGGTT
TTGATGAATTGTTATCCAAAAATATAGATCCTGGAAAAACAGGGCAGTTA
AATGAATTTGAACAGGTTGAAACAATGCTTTCTACTATAGGAGATTTATT
AACAGATGAAGCAAAGATTATTCTTACTTCCAGAAAAACGGCAATCTTTG
CAGGGACTGAATTTGGGGATTGGGTTGATTCTTATAATGGAAATTTTGAT
GTAATTAGGTTTCAATTGGAGAAGCCAAATATCAAACAGTGGCTTTCTAC
TGAACGCTACGAGGAAATTATTGGCAAAAATATTCCCTTGGAAAGCATCT
CAAATCCTGTTCTATTAACTTATTTACGTAATATAGATCAAAATAATTTT
AGTGATTTGTTGATTTATCCAGAGACGATTACAGATAAGTATTTCGAATA
TCTATTGAACCGGGAGAAGGAAAGACAAAATCTTATTATTCGTTGGGAAG
ATCAGATGCAAATATTTGAGAATCTAGCTAGATCTTTTGTAGAGTTTGAC
ATTACAGGAGAGAATAGGAGTTTTGTCAAAGAACTGATCATTGAATACAA
TAAATCTCGTCTTCTGGATTATAAAGAGTTGATGCCAACAAAACAGACTT
TGGAGGAGCTTGCAGACACTCTTACAAATCATGCCCTCTTAGATCGAGCA
GGGAATAAGGATTTTATCTCTTTTATCAATGAGTTTATTTTTGGCTATTT
GCTCGGAAAATCAATACAAAAAGAGCCGGTTGCATTTTTGCAAAAACTAG
CTCCTTTACCTAACAATCTGATCGAATTAGCTGTTTGCTCATACAAATAT
TCTTCTAAAAAAGATAAATTAGAATTATGGAATAAACTTTCAGTAATAAA
AGATAAAATGTCATTTTATTTGGCTGTCATTACAGATTGTGTTCTCATAG
GAAAGATAATGGGTACTTATGAATGCAAAGGTCTAAATTCCTTTCATTTT
GAAGATCTTAAAATCTTCAGTGAAGAGTGTAAGTTTACAGAAACTTCATT
TGTAGATTCAGTATTCGAAAGGTGCACCTTTGATGTAAATGCATTTCATA
ATGTTACATTTACAGGATGTAAATTTATTGACTGTAATATGAGAGACAAT
TTGAGTTCTTGTTCTCACAATATCCATTTTTATGGATGCGATGACTACAA
CAATGGCTTTATCTCTTCTTTAAAGGTTATGCCAACTTTTGATTTACAAA
AACAAGAAGATATAGATTTGGAAATCGAGATACTTGGAAAATTCTTCAAA
GTGGATGGAAAATCTCCAAAAATGAAGTATATTTCTGCTCTTAGAAAAGA
ATTTGAAGGACAAGATTTGGATGTTGTATTTGCCACTTTCGAAATTTTAA
AGAAAAAGGGTATGATCCTGATAGATGGAAACAACTCACATATTTCAAAA
TCAGGCATCAGTTATTATCATAAGAATATACAAATA

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