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Porphyromonas gingivalis Search Results

Record: 1 of 1  
MiniMap IGR1151 IGR1147 IGR1149 IGR1148 IGR1146 IGR1150 IGR1152 PG1342 PG1341 PG1335 PG1340 PG1338.1 PG1339 PG1338 PG1336 PG1337 PG1342 PG1341 PG1335 PG1340 PG1338.1 PG1339 PG1338 PG1336 PG1337 PG1341 PG1335 PG1340 PG1342 PG1339 PG1338 PG1336 PG1337 PG1338.1


LANL Gene ID: PG1338

GenBank Locus Tag: PG1530

DNA Molecule Name:
1  

GenBank ID:
34541192

Gene Name:


Definition:
hypothetical protein

Cellular Location:
Cytoplasm [Evidence]

Gene Start:
1609513

Gene Stop:
1610400

Gene Length:
888

Molecular Weight*:
35065

pI*:
7.00

Net Charge*:
0.00

EC:
 

Functional Class:
Unknown; Hypothetical  

Gene Ontology:
Biological process
  GO:0015969    guanosine tetraphosphate metabolic process


Pathway: pathway table

Comment:
TIGR ID: PG1530

Human Oral Microbiome Database:
View in HOMD Genome Viewer

Blast Summary:  PSI-Blast Search
Residues 14-159 show 30% similarity to AE002006, D. radiodurans conserved hypothetical protein.

Top Blast Hits:  Updated monthly
Click here to view the entire PsiBlast results.
 gi|34541192|ref|NP_905671.1|  hypothetical protein PG1530 [P...   550   e-155
 gi|67154419|ref|ZP_00416164.1|  conserved domain protein [Az...   189   2e-46
 gi|156863084|gb|EDO56515.1|  hypothetical protein CLOL250_02...   139   3e-31
 gi|15806636|ref|NP_295354.1|  hypothetical protein DR_1631 [...    68   8e-10
 gi|68053942|ref|ZP_00538107.1|  RelA/SpoT [Exiguobacterium s...    65   5e-09
 gi|94985528|ref|YP_604892.1|  RelA/SpoT [Deinococcus geother...    60   1e-07
 gi|23465967|ref|NP_696570.1|  narrowly conserved hypothetica...    57   1e-06
 gi|25028575|ref|NP_738629.1|  putative GTP pyrophosphokinase...    55   4e-06


InterPro Summary:  InterProScan

InterPro
IPR007685
Domain
RelA/SpoT
PF04607 [30-159]T 8.20001307135003E-40 PF04607 RelA_SpoT RelA_SpoT
noIPR
unintegrated
unintegrated
SSF81301 [5-183]T 2.4E-21 SSF81301 SSF81301 SSF81301


COGS Summary:  COGS Search
No hit to the COGs database.
Blocks Summary:  Blocks Search
No significant hit to the Blocks database.

 ProDom Summary:  Protein Domain Search
No significant hit to the ProDom database.

Paralogs:  Local Blast Search
No paralogs found in P. gingivalis.

Pfam Summary:  Pfam Search
Residues 30 to 160 (E-value = 1e-06) place PG1338 in the RelA_SpoT family which is described as Region found in RelA / SpoT proteins (PF04607)

 Structural Feature(s):
Feature Type  Start  Stop
coil-coil  
32  
66

Top PDB Hits:
No significant hits to the PDB database (E-value < E-10).

Gene Protein Sequence:
MSAGNKVLKDIATNLEHVLNKCGVMYHVFHRTKSVMSIKNKLERKANEYR
EKNKKMQDLLALRITLYFTDDVELIHNYLKSQPNFDSESVDEAEVDKFCP
KRLNLVMRVPDILKQDMKAAIEETHYKDLIDDTYEIQIRTILSEGWHEVE
HDLRYKCKEEWDEFKEESRLLNGVYATLENSEWSMLTLFDRLSYAQYKNK
AWNSMLRNKMRVRFVDKGLSKELCEYLSDNRNTAKLLFRANRGLILKLVM
EKGFAYPLTYDTVVHLINHIVMKDKNLANFEDDILKKDMELLFGEL

Gene Nucleotide Sequence:  Sequence Viewer
ATGAGCGCAGGAAATAAAGTTTTGAAAGATATCGCAACAAACTTAGAGCA
TGTTTTAAACAAATGTGGTGTTATGTATCATGTGTTTCATCGGACCAAGT
CTGTAATGTCTATTAAAAATAAACTTGAAAGAAAAGCCAATGAATATCGC
GAGAAAAATAAGAAGATGCAGGATCTATTAGCTCTTCGTATTACATTGTA
TTTTACAGATGATGTCGAACTTATTCACAACTATTTAAAAAGTCAACCAA
ATTTTGATAGTGAATCTGTTGATGAAGCTGAGGTTGACAAATTTTGTCCC
AAAAGACTAAACTTAGTGATGCGTGTTCCCGACATCCTCAAACAAGATAT
GAAAGCCGCTATAGAAGAAACACATTATAAAGATTTAATTGATGACACCT
ATGAAATTCAAATTAGAACTATTTTATCAGAAGGATGGCACGAAGTTGAA
CATGATTTGCGTTATAAATGTAAAGAAGAATGGGACGAGTTCAAAGAAGA
GTCCAGGCTTTTGAATGGAGTTTATGCTACCTTGGAAAACAGTGAATGGT
CAATGCTTACTTTATTTGACAGACTTTCATATGCTCAGTATAAAAATAAA
GCATGGAATAGCATGCTGCGCAACAAAATGAGAGTACGTTTTGTTGACAA
GGGATTGTCAAAAGAACTCTGTGAATATTTATCTGATAATCGTAATACTG
CAAAGCTATTGTTTCGTGCAAATAGAGGATTAATATTAAAATTAGTGATG
GAAAAAGGTTTTGCCTACCCACTTACTTATGATACCGTAGTTCATCTAAT
CAATCATATTGTCATGAAAGACAAAAATTTAGCAAATTTTGAAGATGACA
TTTTAAAAAAAGACATGGAATTACTGTTTGGCGAATTA

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