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Porphyromonas gingivalis Search Results

Record: 1 of 1  
MiniMap IGR1371 IGR1370 IGR1368 IGR1369 PG1609 spo, - PG1610 PG1612 dfp, - PG1613 recN, - PG1611 ISPg1, - PG1607 hagD,prtK,prtP,kgp, - PG1605 PG1609 spo, - PG1610 PG1612 dfp, - PG1613 recN, - PG1611 ISPg1, - PG1607 hagD,prtK,prtP,kgp, - PG1605 Type: IS element, Name: ISPg1 fragment - 3 Type: IS element, Name: ISPg1 fragment - 3 PG1609 spo, - PG1610 PG1612 dfp, - PG1613 recN, - PG1611 hagD,prtK,prtP,kgp, - PG1605 ISPg1, - PG1608 ISPg1, - PG1607 ISPg1, - PG1608


LANL Gene ID: PG1607

GenBank Locus Tag: PG1845

DNA Molecule Name:
1  

GenBank ID:


Gene Name:
ISPg1  

Definition:
ISPG1 fragment (TnpA3-related)

Cellular Location:
Cytoplasm [Evidence]

Gene Start:
1945287

Gene Stop:
1945640

Gene Length:
354

Molecular Weight*:
13954

pI*:
10.50

Net Charge*:
7.42

EC:
 

Functional Class:
Transposon functions  

Gene Ontology:

Pathway: pathway table

Primary Evidence:
Hanley,S.A., Aduse-Opoku,J. and Curtis,M.A.
A 55-kilodalton immunodominant antigen of Porphyromonas gingivalis
W50 has arisen via horizontal gene transfer
Infect. Immun. 67 (3), 1157-1171 (1999)

Maley,J. and Roberts,I.S.
Characterisation of IS1126 from Porphyromonas gingivalis W83: a new member of the IS4 family of insertion sequence elements
Microbiol. Lett. 123 (1-2), 219-224 (1994)

Shibata,Y., Hayakawa,M., Takiguchi,H., Shiroza,T. and Abiko,Y.
Determination and characterization of the hemagglutinin-associated
short motifs found in Porphyromonas gingivalis multiple gene
products. J. Biol. Chem. 274 (8), 5012-5020 (1999)

Secondary Evidence:
Knight,A.I., Ni,H., Cartwright,K.A. and McFadden,J.J.
Identification and characterization of a novel insertion sequence,
IS1106, downstream of the porA gene in B15 Neisseria meningitidis.
Mol. Microbiol. 6 (11), 1565-1573 (1992)

Comment:
TIGR ID: PG1845

Human Oral Microbiome Database:
View in HOMD Genome Viewer

Blast Summary:  PSI-Blast Search
PG1607 is partially equivalent to the previously sequenced AJ130872 and AB015879 in GenBANK. Residues 10-117 are 30% similar to the N-terminal portion of the transposase-like protein TnpA3 in Pseudomonas stutzeri (AF039534).

Top Blast Hits:  Updated monthly
Click here to view the entire PsiBlast results.
 gi|34541013|ref|NP_905492.1|  ISPg1, transposase, internal d...   206   3e-52
 gi|4001716|dbj|BAA35090.1|  ORF7 [Porphyromonas gingivalis]       205   7e-52
 gi|34540041|ref|NP_904520.1|  ISPg1, transposase [Porphyromo...   204   2e-51
 gi|34540279|ref|NP_904758.1|  ISPg1, transposase [Porphyromo...   203   3e-51
 gi|3869078|dbj|BAA34342.1|  Insertion sequence IS1126-like g...   199   4e-50
 gi|3901097|emb|CAA10225.1|  transposase [Porphyromonas gingi...   197   1e-49
 gi|1361314|pir||S57895  hypothetical protein 1 - Porphyromon...   194   1e-48
 gi|91218509|ref|ZP_01255448.1|  ISPg1, transposase [Psychrof...    90   4e-17
 gi|91216745|ref|ZP_01253710.1|  ISPg1, transposase [Psychrof...    89   8e-17
 gi|20091525|ref|NP_617600.1|  transposase [Methanosarcina ac...    67   3e-10


InterPro Summary:  InterProScan

No hits reported.

COGS Summary:  COGS Search
No hit to the COGs database.
Blocks Summary:  Blocks Search
No significant hit to the Blocks database.

 ProDom Summary:  Protein Domain Search
Residues 12-101 are 97% similar to a (TRANSPOSASE PROTEIN INSERTION ELEMENT) protein domain (PD007264 which is seen in Q9ZAD0_PORGI.


Paralogs:  Local Blast Search
PG1607 is similar to other ISPG1 fragments, PG0842, PG0732, PG1159 and is similar to the N-terminal end of complete ISPg1 sequences, PG1622, PG1422, PG1267, PG1062, PG1050, PG0918, PG0740, PG0169, PG1099, PG0499, PG0420, PG0884, and PG0731, all IS1106-related.

Pfam Summary:  Pfam Search
No significant hits to the Pfam 11.0 database

 Structural Feature(s):
Feature Type  Start  Stop
No predicted structural features.  
  
transmembrane  
57  
73

Top PDB Hits:
No significant hits to the PDB database (E-value < E-10).

Gene Protein Sequence:
MAYQSKNTDEHVTFADALLSKRYRKAQNDFLNQVDRLIDWRPIRTLINKK
YTKRQNAIGAPAYDVILLFKMLLPKTWYNLSDCALEERINDSITFSRFLG
LWKRYLPTTAPSVDFVRH

Gene Nucleotide Sequence:  Sequence Viewer
ATGGCATACCAATCCAAGAATACCGATGAGCATGTAACATTTGCAGACGC
ACTCCTTTCAAAGCGTTATCGCAAAGCACAAAACGACTTCCTCAATCAGG
TTGACAGGCTTATCGATTGGCGTCCGATCAGGACGCTGATCAACAAGAAA
TACACGAAGCGACAAAATGCCATCGGCGCCCCGGCTTATGACGTGATTCT
CTTATTCAAGATGTTGCTTCCGAAGACATGGTACAACCTCAGTGATTGTG
CTTTGGAGGAGCGCATCAATGATTCAATCACCTTTTCCCGATTCTTGGGG
CTATGGAAGAGGTATCTCCCGACCACAGCACCATCAGTCGATTTCGTTCG
GCAC

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