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Porphyromonas gingivalis Search Results

Record: 1 of 1  
MiniMap IGR1419 IGR1418 IGR1415 IGR1417 IGR1410 IGR1411 IGR1409 IGR1414 IGR1413 IGR1412 IGR1416 IGR1420 PG1664.1 PG1659.1 ISPg3, - PG1660 rrf, - PG1657 ISPg3, - PG1663 pyrH, - PG1658 ISPg1, - PG1665 PG1656 PG1659 PG1663.1 PG1664 ISPg1,tnp, - PG1662 PG1664.1 PG1659.1 ISPg3, - PG1660 rrf, - PG1657 ISPg3, - PG1663 pyrH, - PG1658 ISPg1, - PG1665 PG1656 PG1659 PG1663.1 PG1664 ISPg1,tnp, - PG1662 Type: IS element, Name: ISPg3 fragment - 6 Type: IS element, Name: ISPg1 - 2 Type: IS element, Name: ISPg1 - 2 Type: IS element, Name: ISPg3 fragment - 6 ISPg3, - PG1660 rrf, - PG1657 ISPg3, - PG1663 pyrH, - PG1658 ISPg1, - PG1665 PG1656 PG1659 PG1664.1 PG1659.1 PG1664 ISPg1,tnp, - PG1662 PG1663.1


LANL Gene ID: PG1660

GenBank Locus Tag: PG1905

DNA Molecule Name:
1  

GenBank ID:


Gene Name:
ISPg3  

Definition:
ISPg3 C-terminal fragment

Cellular Location:
Cytoplasm [Evidence]

Gene Start:
2005447

Gene Stop:
2005007

Gene Length:
441

Molecular Weight*:
17041

pI*:
10.00

Net Charge*:
6.10

EC:
 

Functional Class:
Transposon functions  

Gene Ontology:
Biological process
  GO:0006313    transposition, DNA-mediated

Molecular function
  GO:0003677    DNA binding
  GO:0004803    transposase activity


Pathway: pathway table

Comment:
TIGR ID: PG1905

Human Oral Microbiome Database:
View in HOMD Genome Viewer

Blast Summary:  PSI-Blast Search
PG1660 is similar to a previously sequenced P.gingivalis protein in GenBank, AAC26596.
Two significant hits in gapped BLAST; e.g. residues 1-133 are 53% similar to emb|CAA75664.1| transposase of Pasteurella multocida, residues 1-133 are 52% similar to emb|CAA75661.1| transposase of Pasteurella multocida.

Top Blast Hits:  Updated monthly
Click here to view the entire PsiBlast results.
 gi|61652425|gb|AAX47722.1|  transposase [Porphyromonas gingi...   293   3e-78
 gi|3323385|gb|AAC26596.1|  putative protease [Porphyromonas ...   292   4e-78
 gi|34540105|ref|NP_904584.1|  ISPg3, transposase [Porphyromo...   291   6e-78
 gi|34540580|ref|NP_905059.1|  ISPg3, transposase [Porphyromo...   291   8e-78
 gi|34540050|ref|NP_904529.1|  ISPg3, transposase [Porphyromo...   291   1e-77
 gi|34540967|ref|NP_905446.1|  ISPg3, transposase [Porphyromo...   288   6e-77
 gi|34540773|ref|NP_905252.1|  ISPg3, transposase [Porphyromo...   288   1e-76
 gi|150009840|ref|YP_001304583.1|  putative transposase [Para...   181   1e-44
 gi|150002628|ref|YP_001297372.1|  putative transposase [Bact...   179   3e-44
 gi|17228086|ref|NP_484634.1|  transposase [Nostoc sp. PCC 71...   170   3e-41


InterPro Summary:  InterProScan

InterPro
IPR002559
Domain
Transposase, IS4-like
PF01609 [2-126]T 7.1e-14 PF01609 Transposase_11 Transposase_11


COGS Summary:  COGS Search
No hit to the COGs database.
Blocks Summary:  Blocks Search
No significant hit to the Blocks database.

 ProDom Summary:  Protein Domain Search
Residues 59-133 are identical to a (PROTEASE PUTATIVE TRANSPOSASE PLASMID) protein domain (PD190030 which is seen in O87010_PORGI.

Residues 1-55 are identical to a (TRANSPOSASE PLASMID PROTEIN ELEMENT) protein domain (PD004652 which is seen in O87010_PORGI.

Residues 1-127 are 28% similar to a (HYPOTHETICAL 20.1 KD PROTEIN) protein domain (PD207068 which is seen in Q06444_BACST.


Paralogs:  Local Blast Search
PG1660 is identical to the C-terminal amino acids of PG0718, PG0236, PG0178, PG1115, PG0919, all predicted ISPg3 transposases.
Residues 1-146 are identical to residues 154-299 of PG0718.

Pfam Summary:  Pfam Search
Residues 2 to 126 (E-value = 2.7e-14) place PG1660 in the Transposase_11 family which is described as Transposase DDE domain (PF01609)

 Structural Feature(s):
Feature Type  Start  Stop
coil-coil  
67  
98

Top PDB Hits:
No significant hits to the PDB database (E-value < E-10).

Gene Protein Sequence:
LHIVINDRGEIINYQITPGNCDDREPLKDGTFTKNLFGKLIADRGYISQN
LFDRLFVDDIHMITKIKKNMKNSLMHLYDKVLLRKRALIETVNDMLKNVC
QIEHTRHRSVNNFVTNLISGIIAYNILPKKPELNIEIIRNPNFPISA

Gene Nucleotide Sequence:  Sequence Viewer
CTCCATATTGTTATCAACGACAGGGGTGAAATCATCAACTATCAAATCAC
ACCGGGCAATTGTGATGACAGAGAACCTCTGAAAGACGGAACATTCACCA
AGAATCTTTTTGGCAAACTCATTGCCGATAGAGGCTACATTTCCCAAAAC
CTTTTTGACCGGCTCTTTGTCGATGACATCCACATGATAACCAAAATCAA
AAAGAACATGAAGAACTCCCTGATGCATCTATATGACAAAGTTTTATTGA
GAAAGAGAGCCCTGATCGAAACGGTCAATGATATGCTCAAAAATGTCTGT
CAGATAGAGCACACGAGACATCGCAGTGTCAACAATTTTGTCACCAACCT
GATCTCCGGTATCATCGCTTACAACATCCTGCCTAAAAAGCCTGAACTCA
ATATTGAAATCATCAGAAACCCTAACTTTCCTATTTCCGCT

Los Alamos National Laboratory • Est 1943

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