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Porphyromonas gingivalis Search Results

Record: 1 of 1  
MiniMap IGR1421 IGR1422 IGR1419 IGR1418 IGR1415 IGR1417 IGR1411 IGR1414 IGR1413 IGR1412 IGR1416 IGR1420 PG1664.1 PG1659.1 ISPg3, - PG1660 rl17, - PG1666 ISPg3, - PG1663 rs4, - PG1668 pyrH, - PG1658 ISPg1, - PG1665 rpoA, - PG1667 PG1659 PG1663.1 PG1664 ISPg1,tnp, - PG1662 PG1664.1 PG1659.1 ISPg3, - PG1660 rl17, - PG1666 ISPg3, - PG1663 rs4, - PG1668 pyrH, - PG1658 ISPg1, - PG1665 rpoA, - PG1667 PG1659 PG1663.1 PG1664 ISPg1,tnp, - PG1662 Type: IS element, Name: ISPg3 fragment - 6 Type: IS element, Name: ISPg1 - 2 Type: IS element, Name: ISPg1 - 2 Type: IS element, Name: ISPg3 fragment - 6 ISPg3, - PG1660 rl17, - PG1666 ISPg3, - PG1663 rs4, - PG1668 pyrH, - PG1658 ISPg1, - PG1665 rpoA, - PG1667 PG1659 PG1664.1 PG1659.1 PG1664 ISPg1,tnp, - PG1662 PG1663.1


LANL Gene ID: PG1663

GenBank Locus Tag: PG1907

DNA Molecule Name:
1  

Genomic Island ID:
16

GenBank ID:


 Gene Name:
ISPg3  

 Definition:
ISPg3 (IS195) transposase

 Cellular Location:
Cytoplasm [Evidence]

 Gene Start:
2007249

Gene Stop:
2006701

Gene Length:
549

Molecular Weight*:
21238

pI*:
10.50

Net Charge*:
16.39

EC:
 

 Functional Class:
Transposon functions  

 Gene Ontology:
Biological process
  GO:0006313    transposition, DNA-mediated

Molecular function
  GO:0003677    DNA binding
  GO:0004803    transposase activity


 Pathway: pathway table

 Primary Evidence:
Lewis,J.P. and Macrina,F.L.
IS195, an insertion sequence-like element associated with protease genes in Porphyromonas gingivalis. Infect. Immun. 66 (7), 3035-3042 (1998)
PubMed: 98298016


 Comment:
TIGR ID: PG1907

 Human Oral Microbiome Database:
View in HOMD Genome Viewer

 Blast Summary:  PSI-Blast Search
PG1663 is equivalent to the previously sequenced >gb|AAC26596.1, a predicted ISPg3 transposase. Residues 1-156 are 47% similar to a transposase from Piscirickettsia salmonis (AF184152).

 Top Blast Hits:  Updated monthly
Click here to view the entire PsiBlast results.
 gi|3323385|gb|AAC26596.1|  putative protease [Porphyromonas ...   329   4e-89
 gi|34540580|ref|NP_905059.1|  ISPg3, transposase [Porphyromo...   329   4e-89
 gi|61652425|gb|AAX47722.1|  transposase [Porphyromonas gingi...   325   6e-88
 gi|34540050|ref|NP_904529.1|  ISPg3, transposase [Porphyromo...   325   7e-88
 gi|34540105|ref|NP_904584.1|  ISPg3, transposase [Porphyromo...   325   7e-88
 gi|34540773|ref|NP_905252.1|  ISPg3, transposase [Porphyromo...   324   1e-87
 gi|34540967|ref|NP_905446.1|  ISPg3, transposase [Porphyromo...   318   1e-85
 gi|91793283|ref|YP_562934.1|  transposase, IS4 [Shewanella d...   147   4e-34
 gi|91792448|ref|YP_562099.1|  transposase, IS4 [Shewanella d...   147   4e-34
 gi|91794331|ref|YP_563982.1|  transposase, IS4 [Shewanella d...   146   5e-34


InterPro Summary:  InterProScan

InterPro
IPR002559
Domain
Transposase, IS4-like
PF01609 [113-156]T 3e-06 PF01609 Transposase_11 Transposase_11


COGS Summary:  COGS Search
BeTs to 3 clades of COG0112
COG name: Glycine hydroxymethyltransferase
Functional Class: E
The phylogenetic pattern of COG0112 is amtkYqvcebRhujgpolinx
Number of proteins in this genome belonging to this COG is 2
Blocks Summary:  Blocks Search
No significant hit to the Blocks database.

 ProDom Summary:  Protein Domain Search
Residues 135-156 are 95% similar to a (TRANSPOSASE PLASMID PROTEIN ELEMENT) protein domain (PD004652 which is seen in O87010_PORGI.

Residues 75-133 are identical to a (PROTEASE PUTATIVE TRANSPOSASE PLASMID) protein domain (PD190029 which is seen in O87010_PORGI.

Residues 1-74 are identical to a (PUTATIVE PROTEASE PROTEASE) protein domain (PD203593 which is seen in O87010_PORGI.


Paralogs:  Local Blast Search
PG1663 is paralogous to PG0718, PG0236, PG0178, PG0919, and is similar to PG1115, PG1328, and PG0273 (in order of decreasing similarity), all predicted ISPg3-related transposase sequences. Weak simlarity is seen to PG1061.2 and PG1086.1, hypothetical proteins.

Pfam Summary:  Pfam Search
No significant hits to the Pfam 11.0 database

 Structural Feature(s):
Feature Type  Start  Stop
No predicted structural features.  
  

Top PDB Hits:
No significant hits to the PDB database (E-value < E-10).

Gene Protein Sequence:
MKTNIVDVFCIIDDFSKLFDETIKKKTLEEADKKRRNRKFKMSDSEVMTI
LILFHLSRYRDLKAFYLQYITHSCRSEFPHLVSYNRFVELQSRVGFKLIA
FLNMCCLGQCTGISFIDSTPLKACHIKRAHGHRTMRGWAQKGKSTMGWFY
GFKLHMRPLQNKEVEGRGVLGIKGASERGGSKE

Gene Nucleotide Sequence:  Sequence Viewer
ATGAAGACAAATATAGTTGATGTTTTTTGCATCATAGATGATTTCTCCAA
GCTTTTTGATGAAACAATCAAGAAAAAGACCCTCGAAGAGGCAGACAAAA
AACGCAGGAATAGAAAGTTTAAGATGTCGGACAGTGAGGTCATGACCATC
CTGATCCTGTTTCATCTGTCAAGATACCGAGATTTGAAAGCTTTTTATCT
TCAATACATCACCCACTCGTGTCGATCCGAGTTCCCACATCTTGTCTCTT
ATAATCGCTTTGTGGAGCTGCAAAGCAGGGTAGGTTTCAAGCTGATAGCA
TTTCTCAATATGTGTTGTTTGGGTCAATGTACTGGCATCTCTTTCATCGA
TTCCACCCCATTGAAGGCTTGTCATATCAAACGAGCTCATGGGCATAGGA
CGATGAGGGGATGGGCTCAAAAAGGCAAAAGCACCATGGGTTGGTTTTAT
GGATTCAAACTACATATGAGACCTTTGCAAAATAAGGAGGTGGAGGGAAG
AGGAGTTCTTGGCATAAAAGGAGCGAGTGAAAGGGGTGGCAGTAAGGAG

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