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Porphyromonas gingivalis Search Results

Record: 1 of 1  
MiniMap IGR1421 IGR1424 IGR1422 IGR1419 IGR1418 IGR1415 IGR1417 IGR1414 IGR1413 IGR1423 IGR1412 IGR1416 IGR1420 PG1664.1 PG1659.1 rs13, - PG1670 rs11, - PG1669 ISPg3, - PG1660 rl17, - PG1666 ISPg3, - PG1663 rs4, - PG1668 ISPg1, - PG1665 rpoA, - PG1667 PG1659 PG1663.1 PG1664 ISPg1,tnp, - PG1662 PG1664.1 PG1659.1 rs13, - PG1670 rs11, - PG1669 ISPg3, - PG1660 rl17, - PG1666 ISPg3, - PG1663 rs4, - PG1668 ISPg1, - PG1665 rpoA, - PG1667 PG1659 PG1663.1 PG1664 ISPg1,tnp, - PG1662 Type: IS element, Name: ISPg3 fragment - 6 Type: IS element, Name: ISPg1 - 2 Type: IS element, Name: ISPg1 - 2 Type: IS element, Name: ISPg3 fragment - 6 rs11, - PG1669 ISPg3, - PG1660 rl17, - PG1666 ISPg3, - PG1663 rs4, - PG1668 ISPg1, - PG1665 rpoA, - PG1667 PG1659 PG1664.1 PG1659.1 rs13, - PG1670 PG1664 ISPg1,tnp, - PG1662 PG1663.1


LANL Gene ID: PG1664

GenBank Locus Tag: PG1908

DNA Molecule Name:
1  

Genomic Island ID:
16

GenBank ID:
34541512

 Gene Name:


 Definition:
hypothetical protein

 Cellular Location:
Outer membrane, Periplasm, Inner membrane, Cytoplasm [Evidence]

 Gene Start:
2007938

Gene Stop:
2008780

Gene Length:
843

Molecular Weight*:
33423

pI*:
8.30

Net Charge*:
2.59

EC:
 

 Functional Class:
Unknown; Hypothetical  

 Gene Ontology:

Pathway: pathway table

 Comment:
TIGR ID: PG1908

 Human Oral Microbiome Database:
View in HOMD Genome Viewer

 Blast Summary:  PSI-Blast Search
No significant hit found in gapped BLAST with E value less than e-04.

 Top Blast Hits:  Updated monthly
Click here to view the entire PsiBlast results.
 gi|34541512|ref|NP_905991.1|  hypothetical protein PG1908 [P...   544   e-153
 gi|34540261|ref|NP_904740.1|  hypothetical protein PG0439 [P...   124   7e-27
 gi|34540260|ref|NP_904739.1|  hypothetical protein PG0438 [P...   108   3e-22
 gi|154493485|ref|ZP_02032805.1|  hypothetical protein PARMER...    86   2e-15
 gi|156861724|gb|EDO55155.1|  hypothetical protein BACUNI_012...    79   4e-13
 gi|86141430|ref|ZP_01059976.1|  hypothetical protein MED217_...    75   3e-12
 gi|86141427|ref|ZP_01059973.1|  hypothetical protein MED217_...    75   4e-12
 gi|86143928|ref|ZP_01062296.1|  hypothetical protein MED217_...    75   5e-12
 gi|86141429|ref|ZP_01059975.1|  hypothetical protein MED217_...    74   9e-12
 gi|86141428|ref|ZP_01059974.1|  hypothetical protein MED217_...    72   4e-11


InterPro Summary:  InterProScan

InterPro
IPR005901
Family
Porphyromonas gingivalis protein
TIGR01200 [2-281]T 0.0 TIGR01200 Porph_ging Porph_ging


COGS Summary:  COGS Search
No hit to the COGs database.
Blocks Summary:  Blocks Search
No significant hit to the Blocks database.

 ProDom Summary:  Protein Domain Search
No significant hit to the ProDom database.

Paralogs:  Local Blast Search
Residues 2-261 have 30% similarity to PG0402, a hypothetical protein.
Residues 3-281 have 30% similarity to PG0401, a conserved hypothetical protein.


Pfam Summary:  Pfam Search
No significant hits to the Pfam 11.0 database

 Structural Feature(s):
Feature Type  Start  Stop
cleavable signal  
1  
21

Top PDB Hits:
No significant hits to the PDB database (E-value < E-10).

Gene Protein Sequence:
MTLFRILFYFLLTIVGIYSPSAQEITLEAFKTDTLDKVFLNKCIYRVYYQ
TEIKQDTSQNLPNRGLTLLQIGSKMSKFIDFYQHYTDSLRDETARKKNHS
LATSEVTNFQYSLYSKIIFRNQVFRNYPQKDINTVRLGTEFGEYFTYEEI
APRFDWEISLNEEKNIKGYRCKKATCSYRGRIYQAWYSEDIPIPMGPYVF
GGLPGLIMEIRDSNNEYVFVAMAVLLIKNYDPIYRVNTPYEFLYERDKSW
HEIKKSYQNLYFEIDGKILRSVTPYNPIEKD

Gene Nucleotide Sequence:  Sequence Viewer
ATGACGTTATTTCGCATTTTATTTTACTTTCTACTTACTATAGTTGGTAT
CTATTCCCCTTCTGCTCAGGAAATAACATTGGAGGCTTTCAAAACAGATA
CTCTTGATAAGGTTTTCCTTAATAAATGCATTTATAGGGTATACTACCAA
ACTGAAATTAAGCAGGACACTTCACAAAATCTCCCTAATAGAGGGTTAAC
ACTGCTACAGATAGGATCAAAAATGAGTAAATTTATCGATTTCTATCAGC
ATTATACAGATTCACTTAGAGATGAAACAGCAAGAAAAAAAAATCATTCG
CTTGCCACGAGTGAAGTGACAAATTTCCAGTACTCTCTATATTCCAAAAT
TATATTCCGAAACCAAGTATTTAGAAATTATCCCCAAAAGGACATCAATA
CAGTAAGATTAGGAACTGAATTCGGTGAATATTTCACTTATGAAGAAATA
GCCCCACGGTTTGACTGGGAAATTTCACTGAATGAAGAAAAGAATATCAA
AGGATATCGATGTAAAAAAGCTACATGTTCTTATAGAGGACGGATTTATC
AGGCTTGGTATTCAGAAGATATTCCTATTCCTATGGGGCCATATGTCTTT
GGAGGCTTACCCGGCTTGATCATGGAGATTCGAGACTCTAATAACGAGTA
TGTTTTTGTTGCAATGGCAGTCTTGTTGATAAAAAATTATGATCCCATAT
ATCGAGTGAATACGCCTTATGAATTCCTTTATGAAAGAGATAAATCTTGG
CATGAAATCAAGAAAAGTTATCAAAATCTATATTTTGAGATTGATGGGAA
AATTCTCCGATCAGTGACACCATACAATCCAATTGAAAAGGAT

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