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Porphyromonas gingivalis Search Results

Record: 1 of 1  
MiniMap IGR1469 IGR1472 IGR1470 IGR1473 IGR1468 IGR1474 IGR1471 PG1717 PG1720 PG1723 PG1726 PG1719 PG1718 hagC, - PG1724 hagB, - PG1721 PG1716 PG1717 PG1720 PG1723 PG1726 PG1719 PG1718 hagC, - PG1724 hagB, - PG1721 PG1716 PG1717 PG1720 PG1723 PG1726 PG1722.1 PG1722.1 PG1719 PG1718 hagC, - PG1724 hagB, - PG1721 PG1716


LANL Gene ID: PG1721

GenBank Locus Tag: PG1972

DNA Molecule Name:
1  

Genomic Island ID:
17

GenBank ID:
34541569

 Gene Name:
hagB  

 Definition:
hemagglutinin hagB

 Cellular Location:
Cytoplasm [Evidence]

 Gene Start:
2060145

Gene Stop:
2061263

Gene Length:
1119

Molecular Weight*:
42021

pI*:
9.40

Net Charge*:
3.48

EC:
 

 Functional Class:
Cellular processes; Pathogenesis  

 Gene Ontology:

Pathway: pathway table

 Primary Evidence:
Lepine,G. and Progulske-Fox,A.
Duplication and differential expression of hemagglutinin genes in
Porphyromonas gingivalis.
Oral Microbiol. Immunol. 11 (2), 65-78 (1996)

Progulske-Fox,A., Tumwasorn,S., Lepine,G., Whitlock,J., Savett,D., Ferretti,J.J. and Banas,J.A.
The cloning, expression and sequence analysis of a second
Porphyromonas gingivalis gene that codes for a protein involved in hemagglutination.
Oral Microbiol. Immunol. 10 (5), 311-318 (1995)



 Comment:
The hagC gene is PG1724 and the hagA gene is PG1602.

TIGR ID: PG1972

 Proteomic Data: Proteomic Data Search
TIGR Annotationhemagglutinin protein HagB, GroupD (cellular processes)
ORF #PG-PP/PG-PPC1PG-PP/PG-PPC2
Spectral CountPeptide IntensitySpectral CountPeptide Intensity
ProqValProqValProqValProqVal
TIGRPG1972-0.512.2e-07-0.560.00552.030-0.560.0055
LANLPG17210.700.684.105.64
ConsensusSP1IP1SP2IP2

Human Oral Microbiome Database:
View in HOMD Genome Viewer

 Blast Summary:  PSI-Blast Search
This sequence corresponds to the previously sequenced Z35494 in GenBANK, a predicted hagB hemagglutinin gene.

 Top Blast Hits:  Updated monthly
Click here to view the entire PsiBlast results.
 gi|34541569|ref|NP_906048.1|  hemagglutinin protein HagB [Po...   615   e-174
 gi|609183|emb|CAA84627.1|  HagB hemagglutinin protein [Porph...   578   e-163
 gi|510188|emb|CAA81786.1|  HagC hemagglutinin protein [Porph...   570   e-161
 gi|34541571|ref|NP_906050.1|  hemagglutinin protein HagC [Po...   568   e-160
 gi|32468564|emb|CAD88412.1|  HagB protein [Porphyromonas gin...   228   6e-58
 gi|32468566|emb|CAD88413.1|  HagB protein [Porphyromonas gin...   226   2e-57
 gi|32468598|emb|CAD88429.1|  HagB protein [Porphyromonas gin...   226   2e-57
 gi|32468594|emb|CAD88427.1|  HagB protein [Porphyromonas gin...   225   4e-57
 gi|32468570|emb|CAD88415.1|  HagB protein [Porphyromonas gin...   225   4e-57
 gi|32468578|emb|CAD88419.1|  HagB protein [Porphyromonas gin...   223   1e-56


InterPro Summary:  InterProScan

No hits reported.

COGS Summary:  COGS Search
No hit to the COGs database.
Blocks Summary:  Blocks Search
No significant hit to the Blocks database.

 ProDom Summary:  Protein Domain Search
Residues 24-329 are 94% similar to a (HEMAGGLUTININ PROTEIN HAGB HAGC) protein domain (PD040602 which is seen in Q51828_PORGI.


Paralogs:  Local Blast Search
PG1721 is essentially identical to PG1724, hemagglutinin hagC. Residues 26-372 show 24% similarity to PG0405, a conserved hypothetical protein (possible hemagglutinin protein).

Pfam Summary:  Pfam Search
No significant hits to the Pfam 11.0 database

 Structural Feature(s):
Feature Type  Start  Stop
non-globular  
194  
373

Top PDB Hits:
No significant hits to the PDB database (E-value < E-10).

Gene Protein Sequence:
VSLDTATNNRLIINQIQQKKETQMTVENLRLQRLQNLEHYRFAKNVLTLC
RTANIAKLNPKLPELEKAIEMEDLALNPPVANELTPQVIALDEERDRAYQ
ALMSRVRSYAFDEDSQLRNAAARIEDVAARYGNVIRMNYDKETAAIENFL
TDLKGENIRPLVTKLGVTALVDRLEKNNKAFADFFLRRLSTDQRGKYDVK
ALRAETDRTLVAVVRRMDSIDDMEPSPEIRALIELYNRLVANRRALLARR
ASYGEAAVEKRRAEIAEMLRPLLARIVEEKKTAVFAGRTLGTGKNRHYLI
TFVAENGDEEDRWYRINGEQLVYVPEDELPKPKKKKKPASSTDTPSEPPV
LPDPSQGGSSSGGGEQGSTGGGL

Gene Nucleotide Sequence:  Sequence Viewer
GTGTCACTTGACACTGCTACCAATAACAGATTAATAATCAATCAAATACA
ACAAAAAAAAGAAACACAAATGACTGTAGAAAATTTGCGTCTGCAGCGGC
TCCAAAATTTGGAGCACTACCGTTTTGCCAAGAATGTGCTGACGCTCTGT
CGCACGGCAAATATCGCTAAACTGAATCCCAAACTGCCCGAGCTGGAAAA
GGCTATCGAAATGGAGGATTTGGCTCTGAATCCGCCCGTCGCGAACGAGC
TGACGCCTCAGGTCATAGCCCTCGACGAGGAACGCGACAGAGCCTATCAG
GCGCTGATGTCGCGCGTGCGTTCGTATGCTTTCGACGAGGACAGCCAGCT
GCGCAACGCGGCAGCCAGAATCGAAGACGTGGCCGCTCGCTACGGCAACG
TGATCCGAATGAACTATGACAAGGAGACGGCCGCGATAGAGAATTTCCTC
ACCGATCTCAAGGGCGAGAACATTCGCCCCCTCGTAACGAAACTCGGCGT
GACGGCACTCGTTGACAGACTGGAAAAGAACAATAAGGCCTTCGCCGACT
TCTTCCTCCGCCGTCTGAGCACCGACCAACGAGGCAAATATGACGTGAAG
GCACTCCGTGCCGAGACCGACCGCACATTGGTAGCCGTGGTGCGCCGCAT
GGACTCCATCGACGACATGGAGCCGAGCCCGGAGATCCGTGCGCTCATCG
AGCTCTACAACCGACTCGTGGCCAATCGCCGCGCCCTCTTGGCTCGTCGC
GCCAGCTACGGAGAAGCAGCCGTGGAGAAGCGTCGTGCCGAGATCGCCGA
GATGCTCCGCCCCCTGCTCGCCCGGATCGTGGAGGAGAAGAAGACGGCCG
TCTTTGCCGGTCGCACCCTCGGCACGGGCAAGAACCGCCACTATCTCATC
ACATTCGTAGCCGAGAACGGCGACGAGGAGGATCGCTGGTACCGCATCAA
CGGGGAGCAACTCGTCTATGTGCCCGAAGACGAACTCCCCAAGCCGAAGA
AAAAGAAGAAACCCGCAAGCAGCACGGACACTCCATCCGAGCCGCCCGTC
CTGCCGGATCCATCGCAAGGAGGCAGCAGTAGCGGCGGTGGCGAGCAAGG
CTCTACCGGCGGCGGACTC

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