Basic Search | Intermediate Search | Advanced Search | Gene Image Map |  Sequence Search |  Protein Motif Search |  Repeat Search |  DNA/RNA Motif Search |  Home

Porphyromonas gingivalis Search Results

Record: 1 of 1  
MiniMap IGR1476 IGR1477 IGR1475 IGR1472 IGR1473 IGR1474 IGR1471 IGR1478 PG1728 PG1728.1 PG1727 PG1720 PG1723 PG1726 hagC, - PG1724 hagB, - PG1721 PG1728 PG1728.1 PG1727 PG1720 PG1723 PG1726 hagC, - PG1724 hagB, - PG1721 PG1728.1 PG1727 PG1720 PG1723 PG1726 PG1722.1 PG1722.1 PG1728 hagC, - PG1724 hagB, - PG1721


LANL Gene ID: PG1724

GenBank Locus Tag: PG1975

DNA Molecule Name:
1  

Genomic Island ID:
17

GenBank ID:
34541571

 Gene Name:
hagC  

 Definition:
hemagglutinin hagC

 Cellular Location:
Cytoplasm [Evidence]

 Gene Start:
2063361

Gene Stop:
2064410

Gene Length:
1050

Molecular Weight*:
39313

pI*:
7.50

Net Charge*:
0.48

EC:
 

 Functional Class:
Cellular processes; Pathogenesis  

 Gene Ontology:

Pathway: pathway table

 Primary Evidence:
Lepine,G. and Progulske-Fox,A.
Duplication and differential expression of hemagglutinin genes in
Porphyromonas gingivalis.
Oral Microbiol. Immunol. 11 (2), 65-78 (1996)

 Comment:
TIGR ID: PG1975

 Proteomic Data: Proteomic Data Search
TIGR Annotationhemagglutinin protein HagC, GroupD (cellular processes)
ORF #PG-PP/PG-PPC1PG-PP/PG-PPC2
Spectral CountPeptide IntensitySpectral CountPeptide Intensity
ProqValProqValProqValProqVal
TIGRPG1975-0.420.16-1.440.063.450.0016-1.440.06
LANLPG17240.750.3710.92797.50
ConsensusSP1IP1SP2IP2

Human Oral Microbiome Database:
View in HOMD Genome Viewer

 Blast Summary:  PSI-Blast Search
This sequence corresponds to the previously sequenced PGHAGCG (Z27394) in GenBANK, a predicted hagC gene.

 Top Blast Hits:  Updated monthly
Click here to view the entire PsiBlast results.
 gi|34541571|ref|NP_906050.1|  hemagglutinin protein HagC [Po...   583   e-165
 gi|510188|emb|CAA81786.1|  HagC hemagglutinin protein [Porph...   582   e-164
 gi|34541569|ref|NP_906048.1|  hemagglutinin protein HagB [Po...   569   e-161
 gi|609183|emb|CAA84627.1|  HagB hemagglutinin protein [Porph...   568   e-160
 gi|32468564|emb|CAD88412.1|  HagB protein [Porphyromonas gin...   229   3e-58
 gi|32468566|emb|CAD88413.1|  HagB protein [Porphyromonas gin...   227   1e-57
 gi|32468598|emb|CAD88429.1|  HagB protein [Porphyromonas gin...   226   1e-57
 gi|32468594|emb|CAD88427.1|  HagB protein [Porphyromonas gin...   226   2e-57
 gi|32468570|emb|CAD88415.1|  HagB protein [Porphyromonas gin...   226   2e-57
 gi|32468592|emb|CAD88426.1|  HagB protein [Porphyromonas gin...   224   8e-57


InterPro Summary:  InterProScan

No hits reported.

COGS Summary:  COGS Search
No hit to the COGs database.
Blocks Summary:  Blocks Search
No significant hit to the Blocks database.

 ProDom Summary:  Protein Domain Search
Residues 1-306 are 94% similar to a (HEMAGGLUTININ PROTEIN HAGB HAGC) protein domain (PD040602 which is seen in Q51830_PORGI.


Paralogs:  Local Blast Search
PG1724 is essentially identical to PG1721, hemagglutinin hagB. Residues 4-349 are 24% similar to PG0405, a possible hemagglutinin protein.

Pfam Summary:  Pfam Search
No significant hits to the Pfam 11.0 database

 Structural Feature(s):
Feature Type  Start  Stop
non-globular  
171  
350

Top PDB Hits:
No significant hits to the PDB database (E-value < E-10).

Gene Protein Sequence:
MTAEIFSFSRLQNLEHYRFAKNVLTLCRTANIAKLNPKLPELEKAIEMED
LALNPPVANELTPQVIALDEERDRAYQALMSRVRSYAFDEDSQLRNAAAR
IEDVAARYGNVIRMNYDKETAAIENFLTDLKGENIRPLVTKLGVTALVDR
LEKNNKAFADFFLRRLSTDQRGKYDVKALRAETDRTLVAVVRRMDSIDDM
EPSPEIRALIELYNRLVANRRALLARRASYGEAAVEKRRAEIAEMLRPLL
ARIVEEKKTAVFAGRTLGTGKNRHYLITFVAENGDEEDRWYRIDGEQLVY
VPEDELPKPKKKKKPASSTDTPSEPPVLPDPSQGGSSSGGGEQGSTGGGL


Gene Nucleotide Sequence:  Sequence Viewer
ATGACTGCAGAAATTTTCTCGTTTTCCCGGCTCCAAAATTTGGAGCACTA
CCGTTTTGCCAAGAATGTGCTGACGCTCTGTCGCACGGCAAATATCGCTA
AACTGAATCCCAAACTGCCCGAGCTGGAAAAGGCTATCGAAATGGAGGAT
TTGGCTCTGAATCCGCCCGTCGCGAACGAGCTGACGCCTCAGGTCATAGC
CCTCGACGAGGAACGCGACAGAGCCTATCAGGCGCTGATGTCGCGCGTGC
GTTCGTATGCTTTCGACGAGGACAGCCAGCTGCGCAACGCGGCAGCCAGA
ATCGAAGACGTGGCCGCTCGCTACGGCAACGTGATCCGAATGAACTATGA
CAAGGAGACGGCCGCGATAGAGAATTTCCTCACCGATCTCAAGGGCGAGA
ACATTCGCCCCCTCGTAACGAAACTCGGCGTGACGGCACTCGTTGACAGA
CTGGAAAAGAACAATAAGGCCTTCGCCGACTTCTTCCTCCGCCGTCTGAG
CACCGACCAACGAGGCAAATATGACGTGAAGGCACTCCGTGCCGAGACCG
ACCGCACATTGGTAGCCGTGGTGCGCCGCATGGACTCCATCGACGACATG
GAGCCGAGCCCGGAGATCCGTGCGCTCATCGAGCTCTACAACCGACTCGT
GGCCAATCGCCGCGCCCTCTTGGCTCGTCGCGCCAGCTACGGAGAAGCAG
CCGTGGAGAAGCGTCGTGCCGAGATCGCCGAGATGCTCCGCCCCCTGCTC
GCCCGGATCGTGGAGGAGAAGAAGACGGCCGTCTTTGCCGGTCGCACCCT
CGGCACGGGCAAGAACCGCCACTATCTCATCACATTCGTAGCCGAGAACG
GCGACGAGGAGGATCGCTGGTACCGCATCGACGGGGAACAACTCGTCTAT
GTGCCCGAAGACGAACTCCCCAAGCCGAAGAAAAAGAAGAAACCCGCAAG
CAGCACGGACACCCCATCCGAGCCGCCCGTCCTGCCGGATCCATCGCAAG
GAGGCAGCAGTAGCGGCGGTGGCGAGCAAGGCTCTACCGGCGGCGGACTC

Los Alamos National Laboratory • Est 1943

Operated by Los Alamos National Security, LLC for the U.S. Department of Energy's National Nuclear Security Administration
Inside | © Copyright 2006 LANS LLC All rights reserved | Disclaimer/Privacy