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Porphyromonas gingivalis Search Results

Record: 1 of 1  
MiniMap IGR1597 IGR1601 IGR1602 IGR1598 IGR1599 IGR1596 IGR1600 IGR1594 IGR1595 PG1862.1 ISPg5, - PG1862 PG1860 PG1859 PG1858 ISPg5, - PG1861 PG1863 PG1866 fimA, - PG1865 PG1867 PG1864 PG1868 PG1862.1 ISPg5, - PG1862 PG1860 PG1859 PG1858 ISPg5, - PG1861 PG1863 PG1866 fimA, - PG1865 PG1867 PG1864 PG1868 Type: IS element, Name: ISPg5 - 8 ISPg5, - PG1862 PG1860 PG1858 ISPg5, - PG1861 PG1862.1 PG1859 PG1863 PG1866 fimA, - PG1865 PG1867 PG1864 PG1868


LANL Gene ID: PG1864

GenBank Locus Tag: PG2131

DNA Molecule Name:
1  

GenBank ID:
34541708

Gene Name:


Definition:
60 kDa antigen

Cellular Location:
Cytoplasm, Outer membrane, Periplasm [Evidence]

Gene Start:
2236317

Gene Stop:
2237786

Gene Length:
1470

Molecular Weight*:
55257

pI*:
9.20

Net Charge*:
6.83

EC:
 

Functional Class:
Uncategorized  

Gene Ontology:
Cellular component
  GO:0009279    cell outer membrane
  GO:0016021    integral to membrane


Pathway: pathway table

Primary Evidence:
See Fimbrillins


Comment:
Nucleotide sequence upstream from the major fimbrillin gene (fimA) and related to PG1893, a proposed novel secondary fimbrillin.



TIGR ID: PG2131

Proteomic Data: Proteomic Data Search
TIGR Annotation60 kDa protein, GroupT (unknown function)
ORF #PG-PP/PG-PPC1PG-PP/PG-PPC2
Spectral CountPeptide IntensitySpectral CountPeptide Intensity
ProqValProqValProqValProqVal
TIGRPG21310.324.7e-050.290.0631.2700.290.063
LANLPG18641.251.222.413.75
ConsensusSP1IP1SP2IP2

Human Oral Microbiome Database:
View in HOMD Genome Viewer

 Blast Summary:  PSI-Blast Search
PG1864 is essentially identical (99%) to a previously sequenced
P.gingivalis protein in GenBank, BAA33066, described as a 60 kDa protein.

No significant hits in gapped BLAST, all significant hits are to previously sequenced P.gingivalis proteins.

 Top Blast Hits:  Updated monthly
Click here to view the entire PsiBlast results.
 gi|34541708|ref|NP_906187.1|  60 kDa protein [Porphyromonas ...   954   0.0  
 gi|118200272|dbj|BAF37079.1|  hypothetical protein [Porphyro...   949   0.0  
 gi|48857023|gb|AAT47117.1|  outer membrane protein [Porphyro...   944   0.0  
 gi|3599591|dbj|BAA33066.1|  60kDa protein [Porphyromonas gin...   943   0.0  
 gi|118200282|dbj|BAF37088.1|  hypothetical protein [Porphyro...   942   0.0  
 gi|60681662|ref|YP_211806.1|  hypothetical protein BF2183 [B...   310   1e-82
 gi|53713414|ref|YP_099406.1|  hypothetical protein BF2125 [B...   309   2e-82
 gi|150009193|ref|YP_001303936.1|  hypothetical protein BDI_2...   278   8e-73
 gi|34541739|ref|NP_906218.1|  immunoreactive 53 kDa antigen ...   244   1e-62
 gi|150003480|ref|YP_001298224.1|  hypothetical protein BVU_0...   232   5e-59


InterPro Summary:  InterProScan

InterPro
IPR006664
Domain
Bacterial outer membrane protein
PR01021 [243-258]T 9.9E-5 PR01021 OMPADOMAIN[258-274]T 9.9E-5 PR01021 OMPADOMAIN OMPADOMAIN
InterPro
IPR006665
Domain
OmpA/MotB
PD000930 [204-266]T 0.0 PD000930 OmpA/MotB OmpA/MotB
noIPR
unintegrated
unintegrated
SSF103088 [197-314]T 1.5E-8 SSF103088 SSF103088 SSF103088
SSF48452 [363-473]T 1.9E-5 SSF48452 SSF48452 SSF48452


COGS Summary:  COGS Search
No hit to the COGs database.
Blocks Summary:  Blocks Search
No significant hit to the Blocks database.

 ProDom Summary:  Protein Domain Search
No significant hit to the ProDom database.

Paralogs:  Local Blast Search
Residues 31-482 are 32% similar to PG1893, an immunoreactive 53 kD antigen PG123; residues 248-460 are 26% similar to PG0916, a hypothetical protein (possible immunoreactive antigen).

Pfam Summary:  Pfam Search
No significant hits to the Pfam 11.0 database

 Structural Feature(s):
Feature Type  Start  Stop
gram negative signal  
1  
21
cleavable signal  
1  
19
non-globular  
395  
490

Top PDB Hits:
No significant hits to the PDB database (E-value < E-10).

Gene Protein Sequence:
MKQSRYIILSFLFGMSTLAVTGQTHLGGIKVSEKHVVKKTGHTANVKMDL
DLTAIPDMNSNLLMVVTPIIRSNTSNDQVALRPFLLMGNRRYRIIDRRIA
LDKHHIYNQPDTKPSAMVKRRNGKEQSMDYSAATPYRPWMRHSSMILLAE
NSGCADCPLGSEETTLTDDALVPLYEADYQYEIIVPEGELLKKREETLSA
HLAYQVGKYVVLPQFDGNPAELARIDSKLKEIGNDSDIIFEKLSMVGYAS
PEGGVEYNAKLSKDRAHSFASYLVNKYPILKSRFEYDWKGQDWAGLRAAV
TKSGLSQKDAILEIIDQKPVGERTAALRAIDGGSLYATLLSDYYPPLRRS
ELTFHIVVKGFELDKAREIIKTHPSRLSLAEVYAVAQSYPEGSHERYETW
TIAEKTFPKAIEPTANAAIIDLRAGRYPQALARLEARKSEPKLWMLLGLA
YAYSEKWAEAESYLTRAAQQGRPGAQHNLNELRRYMQDNL

Gene Nucleotide Sequence:  Sequence Viewer
ATGAAACAGAGTCGCTATATCATCCTGTCGTTTCTCTTCGGAATGTCTAC
GCTTGCCGTGACAGGCCAGACCCATCTCGGGGGCATTAAGGTGAGCGAGA
AGCACGTGGTCAAGAAAACGGGACATACCGCCAACGTAAAGATGGACCTT
GATCTGACGGCCATACCGGATATGAACAGCAATCTGCTGATGGTGGTTAC
CCCCATTATTCGTTCCAATACATCGAACGATCAAGTCGCTCTCCGCCCGT
TCCTCCTGATGGGGAACAGACGTTATCGCATCATCGACCGTCGTATCGCT
CTCGATAAGCACCACATCTACAATCAGCCCGACACCAAGCCTTCTGCGAT
GGTAAAGCGTCGCAACGGCAAGGAACAGAGCATGGACTATTCTGCCGCTA
CTCCATATAGGCCATGGATGCGCCACTCATCAATGATTCTATTGGCTGAG
AACTCGGGCTGTGCCGACTGCCCACTCGGATCAGAAGAAACCACACTTAC
GGACGACGCTTTGGTGCCACTGTATGAAGCGGACTATCAATACGAGATCA
TTGTACCCGAGGGAGAGCTGCTGAAAAAACGCGAAGAGACTCTCTCCGCT
CACTTAGCCTATCAGGTAGGGAAATATGTGGTCTTGCCTCAGTTCGACGG
CAATCCGGCCGAGTTGGCACGTATCGACAGCAAACTGAAAGAAATCGGAA
ACGATAGCGATATCATTTTCGAAAAGCTCTCCATGGTAGGCTATGCTTCG
CCGGAAGGTGGCGTAGAATACAACGCGAAGCTCTCCAAGGATAGGGCGCA
TTCATTTGCAAGCTATCTCGTTAACAAGTACCCCATCCTAAAAAGTCGAT
TCGAATACGATTGGAAAGGGCAGGATTGGGCAGGTCTGCGTGCGGCTGTA
ACCAAGAGCGGGCTCTCGCAAAAGGATGCCATACTGGAGATCATCGACCA
AAAGCCGGTCGGTGAGCGTACAGCCGCACTGCGAGCTATCGATGGCGGGT
CTCTCTATGCCACATTGCTCTCGGACTATTACCCCCCGCTTCGCCGAAGC
GAGCTTACATTCCATATCGTGGTCAAAGGATTTGAGTTGGACAAAGCACG
TGAAATTATCAAGACACACCCCTCTCGTCTGAGTCTGGCAGAGGTTTACG
CCGTAGCGCAGAGCTATCCGGAAGGGAGCCACGAACGCTACGAAACGTGG
ACGATAGCAGAGAAAACTTTCCCGAAAGCGATAGAGCCGACAGCCAATGC
GGCTATAATAGACCTTCGTGCCGGCAGGTATCCGCAGGCTCTGGCTCGAC
TCGAAGCACGCAAGAGCGAACCCAAACTATGGATGCTGTTGGGCTTGGCA
TATGCCTACAGCGAAAAATGGGCTGAAGCCGAGAGCTATCTTACTCGCGC
TGCGCAGCAAGGCCGGCCCGGAGCACAACACAATCTGAACGAACTGCGAC
GCTATATGCAAGACAATCTC

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