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Record: 1 of 1 MiniMap

LANL Gene ID: PG1905GenBank Locus Tag: PG2176DNA Molecule Name: 1 Genomic Island ID: 28 GenBank ID: 34541747 Gene Name: ISPg2 Definition: ISPg2 (PGIS2) transposase Cellular Location: Cytoplasm [Evidence] Gene Start: 2284438 Gene Stop: 2283311 Gene Length: 1128 Molecular Weight*: 43313 pI*: 7.40 Net Charge*: 2.35 EC: Functional Class: Transposon functions Gene Ontology: Biological process GO:0006313 transposition, DNA-mediated Molecular function GO:0003677 DNA binding GO:0004803 transposase activity Pathway: pathway table Primary Evidence: Wang,C.Y., Bond,V.C. and Genco,C.A. Identification of a second endogenous Porphyromonas gingivalis insertion element. J. Bacteriol. 179 (11), 3808-3812 (1997) Comment: Note BLAST similarities to E.coli and V.cholerae proteins. Member of IS5 family of elements. TIGR ID: PG2176 Human Oral Microbiome Database: View in HOMD Genome Viewer Blast Summary: PSI-Blast Search PG1905 is equivalent to the previously sequenced gb|AAC45368.1 in GenbBANK. Residues 4-364 are 32% similar to an uncharacterized sequence from E.coli 0157:H7 (AE005200). Residues 11-358 are 31% similar to the RfbQRSO22-3 sequence of V.cholerae (AF004383). Top Blast Hits: Updated monthly Click here to view the entire PsiBlast results. gi|34540119|ref|NP_904598.1| ISPg2, transposase [Porphyromo... 717 0.0 gi|91214690|ref|ZP_01251663.1| putative H repeat-associated... 222 3e-56 gi|91215887|ref|ZP_01252856.1| putative H repeat-associated... 221 5e-56 gi|56475478|ref|YP_157067.1| transposase (IS4) [Azoarcus sp... 187 1e-45 gi|56475480|ref|YP_157069.1| transposase (IS4) [Azoarcus sp... 187 1e-45 gi|87307470|ref|ZP_01089614.1| hypothetical protein DSM3645... 180 1e-43 gi|87310239|ref|ZP_01092370.1| putative H repeat-associated... 180 1e-43 gi|87308374|ref|ZP_01090515.1| hypothetical protein DSM3645... 179 2e-43 gi|34540798|ref|NP_905277.1| ISPg6, transposase [Porphyromo... 178 5e-43 gi|119898341|ref|YP_933554.1| putative H repeat-associated ... 176 2e-42 InterPro Summary: InterProScan

InterPro
IPR002559
Domain

Transposase, IS4-like
PF01609		Transposase_11

COGS Summary: COGS Search No hit to the COGs database. Blocks Summary: Blocks Search ***** PF01811 (Transposase) with a combined E-value of 2e-24. PF01811A 0-35 PF01811B 36-52 PF01811E 134-181 PF01811F 183-207 ProDom Summary: Protein Domain Search Residues 132-264 are identical to a (PROTEIN TRANSPOSASE REGION PUTATIVE) protein domain (PD004339 which is seen in P95492_PORGI. Residues 332-376 are identical to a (PUTATIVE TRANSPOSASE) protein domain (PD054580 which is seen in P95492_PORGI. Residues 279-331 are identical to a (PROTEIN TRANSPOSASE PUTATIVE REGION) protein domain (PD004012 which is seen in P95492_PORGI. Residues 1-131 are 83% similar to a (PUTATIVE TRANSPOSASE) protein domain (PD103322 which is seen in P95492_PORGI. Paralogs: Local Blast Search PG1905 is identical to PG1522, PG1185, PG0775 and PG0249, all predicted ISPg2 elements. PG1905 is similar to PG0943 and weakly similar to PG1058, PG0889, PG1795 and PG1855. Pfam Summary: Pfam Search Residues 110 to 344 (E-value = 5.8e-39) place PG1905 in the Transposase_11 family which is described as Transposase DDE domain (PF01609) Structural Feature(s): Feature Type Start Stop transmembrane 22 38 coil-coil 43 70 non-globular 331 376 Top PDB Hits: No significant hits to the PDB database (E-value < E-10). Gene Protein Sequence: MYHSLFESLCMVPDPRIERKKIYPLDFLLLIVFLSTLSGNTSWYEIEDYA EEYEEELKSLYEMLTGHQLMHTMPSHDTLNRSISLLDVEAFEGAYKRWIE GFISATSGKHICIDGKTMRGVKKLSFDTQSHVVSAFSPQDMCSLAQLYID RKTNEIPAIHQLLDLLDLNGAVVSIDAIGTQTAIAEQIIDKGGNYVLCVK ANQSLSLQEIEAYFCPLFQKHILLDEQTELSHGRIETRRYESILNPLEIE ANEVLTRWKGLRSIHKVVRKRRDKKSDKTSEEVAYYISSLTDVSSLKQAI RGHWAIENKLHHCLDVYFGHDASHKRTRNVAQIMDIIQKINLLIIERLKT NMKSSIPRIQKKLARMKPQQLITIQF Gene Nucleotide Sequence: Sequence Viewer ATGTATCATTCTCTATTTGAAAGCCTCTGCATGGTTCCGGACCCACGGAT AGAGCGTAAAAAAATTTATCCTCTTGATTTTTTACTGCTGATCGTTTTCC TCTCTACACTCTCAGGCAATACCTCTTGGTATGAGATTGAAGATTATGCC GAGGAATACGAAGAAGAATTGAAAAGTCTATACGAAATGCTTACCGGCCA TCAGCTTATGCATACCATGCCTTCTCATGATACTCTCAACAGGAGCATCA GTCTGTTGGATGTAGAAGCTTTTGAGGGGGCTTATAAGCGATGGATTGAA GGCTTTATCTCGGCCACTTCGGGTAAACATATTTGCATTGATGGCAAGAC GATGCGGGGAGTGAAGAAACTCTCTTTCGATACACAATCCCATGTCGTCT CTGCCTTTTCACCACAAGATATGTGCAGTCTTGCCCAACTCTACATCGAC CGAAAAACAAACGAAATACCGGCTATACATCAACTTCTTGATTTGCTTGA CTTGAACGGGGCTGTTGTCTCCATTGATGCCATAGGTACACAAACTGCCA TTGCCGAACAAATTATCGATAAGGGCGGAAACTATGTATTGTGTGTTAAA GCGAATCAAAGTTTGAGTCTGCAAGAGATTGAAGCCTATTTCTGCCCTCT TTTTCAGAAACATATCCTCCTTGACGAACAGACGGAACTATCTCACGGAC GCATAGAAACACGTCGCTATGAAAGTATTCTCAATCCCTTGGAGATAGAA GCCAACGAGGTATTAACTCGCTGGAAAGGCTTGAGGTCGATACACAAAGT TGTACGCAAACGAAGGGATAAAAAGAGTGACAAAACGAGTGAAGAAGTGG CCTACTACATTTCGTCATTAACAGATGTTTCTTCATTGAAACAAGCTATT CGTGGGCATTGGGCGATAGAGAATAAGTTACACCACTGTTTGGATGTCTA TTTCGGACACGATGCCTCGCACAAGAGAACGAGGAATGTGGCGCAGATTA TGGATATCATTCAAAAGATTAATTTACTCATTATAGAGAGACTAAAAACG AATATGAAGTCCTCAATCCCTCGCATCCAAAAGAAACTGGCTCGAATGAA GCCACAACAACTAATCACAATACAATTT Los Alamos National Laboratory • Est 1943 Operated by Los Alamos National Security, LLC for the U.S. Department of Energy's National Nuclear Security Administration Inside | © Copyright 2006 LANS LLC All rights reserved | Disclaimer/Privacy

`Feature Type`	`Start`	`Stop`
`transmembrane`	`22`	`38`
`coil-coil`	`43`	`70`
`non-globular`	`331`	`376`