Basic Search | Intermediate Search | Advanced Search | Gene Image Map |  Sequence Search |  Protein Motif Search |  Repeat Search |  DNA/RNA Motif Search |  Home

Porphyromonas gingivalis Search Results

Record: 1 of 1  
MiniMap IGR1647 IGR1652 IGR1653 IGR1649 IGR1648 IGR1651 IGR1650 ftsE, - PG1917 ISPg1, - PG1919 ISPg4,tnp, - PG1920 lysC, - PG1916 PG1923 PG1921 PG25, - PG1922 PG1918 ftsE, - PG1917 ISPg1, - PG1919 ISPg4,tnp, - PG1920 lysC, - PG1916 PG1923 PG1921 PG25, - PG1922 PG1918 Type: IS element, Name: ISPg1 - 2 Type: IS element, Name: ISPg1 fragment - 3 Type: IS element, Name: ISPg4 - 7 ftsE, - PG1917 ISPg1, - PG1919 ISPg4,tnp, - PG1920 lysC, - PG1916 PG1923 PG1921 PG25, - PG1922 PG1918


LANL Gene ID: PG1920

GenBank Locus Tag: PG2194

DNA Molecule Name:
1  

Genomic Island ID:
29

GenBank ID:
34541761

 Gene Name:
ISPg4  tnp  

 Definition:
ISPg4 transposase

 Cellular Location:
Inner membrane, Cytoplasm [Evidence]

 Gene Start:
2302212

Gene Stop:
2301058

Gene Length:
1155

Molecular Weight*:
44056

pI*:
10.30

Net Charge*:
17.13

EC:
 

 Functional Class:
Transposon functions  

 Gene Ontology:
Biological process
  GO:0006313    transposition, DNA-mediated

Molecular function
  GO:0003677    DNA binding
  GO:0004803    transposase activity


 Pathway: pathway table

 Primary Evidence:
Sawada,K., Kokeguchi,S., Hongyo,H., Sawada,S., Miyamoto,M.,
Maeda,H., Nishimura,F., Takashiba,S. and Murayama,Y.
Identification by subtractive hybridization of a novel insertion
sequence specific for virulent strains of porphyromonas gingivalis. Infect. Immun. 67 (11), 5621-5625 (1999)

 Secondary Evidence:
Nagai,T., Phan Tran,L.S., Inatsu,Y. and Itoh,Y.
A new IS4 family insertion sequence, IS4Bsu1, responsible for
genetic instability of poly-gamma-glutamic acid production in
bacillus subtilis. J. Bacteriol. 182 (9), 2387-2392 (2000)

 Comment:
Member of the IS5 family of IS elements.

TIGR ID: PG2194

 Human Oral Microbiome Database:
View in HOMD Genome Viewer

 Blast Summary:  PSI-Blast Search
PG1920 is equivalent to the previously sequenced AF148127 in GenBANK. See also AB009361, AB003149. Residues 20-337 are 27% similar to a transposase from B.subtilis (AB031551).

 Top Blast Hits:  Updated monthly
Click here to view the entire PsiBlast results.
 gi|34539923|ref|NP_904402.1|  ISPg4, transposase [Porphyromo...   756   0.0  
 gi|34539897|ref|NP_904376.1|  ISPg4 transposase [Porphyromon...   754   0.0  
 gi|34540966|ref|NP_905445.1|  ISPg4, transposase [Porphyromo...   753   0.0  
 gi|34540035|ref|NP_904514.1|  ISPg4, transposase [Porphyromo...   751   0.0  
 gi|5763509|dbj|BAA83477.1|  transposase [Porphyromonas gingi...   745   0.0  
 gi|5763505|dbj|BAA83475.1|  transposase [Porphyromonas gingi...   494   e-138
 gi|150384831|ref|ZP_01923500.1|  transposase, IS4 family pro...   293   1e-77
 gi|150385323|ref|ZP_01923963.1|  transposase, IS4 family pro...   292   2e-77
 gi|5763507|dbj|BAA83476.1|  transposase [Porphyromonas gingi...   243   2e-62
 gi|67941161|ref|ZP_00533393.1|  Transposase, IS4 [Chlorobium...   223   1e-56


InterPro Summary:  InterProScan

InterPro
IPR002559
Domain
Transposase, IS4-like
PF01609 [124-335]T 5.0000090991531485E-40 PF01609 Transposase_11 Transposase_11
InterPro
IPR012337
Domain
Polynucleotidyl transferase, Ribonuclease H fold
SSF53098 [185-350]T 2.3000000000000003E-22 SSF53098 RNaseH_fold RNaseH_fold


COGS Summary:  COGS Search
No hit to the COGs database.
Blocks Summary:  Blocks Search
***** PF01609 (Transposase (IS4 family)) with a combined E-value of 1.4e-08.
    PF01609B    288-309


 ProDom Summary:  Protein Domain Search
Residues 271-336 are 45% similar to a (TRANSPOSASE PUTATIVE PLASMID ELEMENT) protein domain (PD003301 which is seen in Y4ZB_RHISN.


Paralogs:  Local Blast Search
PG1920 is identical to PG0043, and is essentially identical to PG1461, PG0016, PG1114, PG1447, PG0868, PG0445, PG0205, and PG0162, all ISPg4 transposases.

Pfam Summary:  Pfam Search
Residues 124 to 335 (E-value = 6.9e-43) place PG1920 in the Transposase_11 family which is described as Transposase DDE domain (PF01609)

 Structural Feature(s):
Feature Type  Start  Stop
uncleavable signal  
1  
51
transmembrane  
283  
300
transmembrane  
321  
337
transmembrane  
324  
341

Top PDB Hits:
No significant hits to the PDB database (E-value < E-10).

Gene Protein Sequence:
MSTNISLFAQVIRLLPRPLIKKLSTEFQVNKHSKHFTGWQHLVSMIFSQF
SSCISLREISNGLRSATGNLNHLGICTAPSKSNLSYQNEHRTSDFFRACY
YALLDYFGQQGMGQGRKFRFKQPVKLLDSTTITLCLALYDWAKYTHTKGA
VKLHTLLDFKTLLPEYVHISDGKGHDGKMANSIPIPAGSIVVADRGYADT
ALLNSWDSTQVSFVVRHPRSLKYEVIQELELPEHGHQQILVDQRVRLTGV
QTQGKYTKPLRHIALYNEQHGDVVELLTNIDTLAASSIALLYRSRWLIEI
FFRNLKQRLSMKAFLGTTRNAVEVQIWTALITMLLMVYLKSIAKYRWCLS
NLVSSLRINTFTKMDLMQWLNEPFTPPPEPENQLF

Gene Nucleotide Sequence:  Sequence Viewer
ATGAGTACAAATATAAGCCTATTCGCCCAAGTTATCCGCCTGTTGCCTCG
TCCGTTGATTAAGAAGCTCTCTACAGAGTTTCAAGTAAACAAACATAGCA
AACACTTCACAGGGTGGCAACACTTAGTGAGCATGATTTTCAGCCAATTC
TCAAGCTGTATCTCCTTACGCGAGATTAGTAATGGCTTACGCTCAGCCAC
AGGTAACCTCAACCACTTAGGCATATGCACAGCACCCTCTAAGTCCAATT
TATCTTATCAGAACGAGCACCGTACCTCAGACTTCTTTCGAGCGTGCTAT
TATGCCTTGCTAGATTATTTCGGACAGCAGGGTATGGGGCAAGGGCGTAA
GTTTCGTTTTAAGCAACCCGTCAAGCTTCTAGACTCTACGACCATTACCC
TTTGCCTTGCCCTATACGATTGGGCTAAATACACACATACGAAAGGAGCT
GTTAAGCTTCATACACTCTTAGACTTCAAGACTCTATTGCCTGAATATGT
GCATATTAGTGATGGTAAAGGACATGATGGCAAGATGGCCAATTCTATTC
CTATCCCAGCAGGAAGTATCGTCGTGGCTGACCGTGGCTATGCTGATACC
GCCTTGCTCAATAGTTGGGACAGCACCCAAGTGAGTTTTGTAGTACGCCA
CCCAAGGTCCTTAAAATATGAGGTTATTCAAGAGTTGGAACTCCCAGAAC
ATGGGCATCAGCAAATACTAGTAGATCAGAGAGTACGGCTCACAGGCGTT
CAGACGCAAGGCAAGTACACTAAGCCATTGAGGCATATTGCCCTCTACAA
CGAGCAACATGGCGATGTCGTTGAGTTATTGACCAACATAGACACCCTTG
CAGCAAGTAGTATAGCCTTGCTGTATCGTTCAAGATGGCTTATCGAGATT
TTCTTTCGGAATTTGAAGCAACGCCTCAGCATGAAGGCCTTTCTTGGAAC
AACGCGCAATGCCGTAGAGGTGCAAATATGGACCGCTCTTATTACAATGC
TTTTGATGGTCTATCTCAAGAGTATCGCCAAATATCGGTGGTGCTTGTCT
AATCTTGTCTCTTCGCTAAGAATCAACACATTTACCAAGATGGATCTGAT
GCAATGGCTTAATGAGCCGTTTACGCCTCCGCCAGAGCCCGAAAATCAGC
TCTTT

Los Alamos National Laboratory • Est 1943

Operated by Los Alamos National Security, LLC for the U.S. Department of Energy's National Nuclear Security Administration
Inside | © Copyright 2006 LANS LLC All rights reserved | Disclaimer/Privacy