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Porphyromonas gingivalis Search Results

Record: 1 of 1  
MiniMap IGR0002 IGR0001 IGR1674 IGR1672 IGR0003 IGR0004 IGR1675 IGR1673 IGR1676 PG0003 PG0005 PG1947 PG1945 PG0002 PG1949 PG0004 msbB, - PG1943 PG1944 dnaA, - PG0001 PG1948 PG0003 PG0005 PG1947 PG1945 PG0002 PG1949 PG0004 msbB, - PG1943 PG1944 dnaA, - PG0001 PG1948 PG0003 PG0005 PG1945 PG0002 PG1949 PG0004 msbB, - PG1943 PG1944 dnaA, - PG0001 PG1948 PG1947


LANL Gene ID: PG1949

GenBank Locus Tag: PG2227

DNA Molecule Name:
1  

GenBank ID:
34541789

Gene Name:


Definition:
hypothetical protein

Cellular Location:
Periplasm [Evidence]

Gene Start:
2342151

Gene Stop:
2342804

Gene Length:
654

Molecular Weight*:
23424

pI*:
5.20

Net Charge*:
-3.04

EC:
 

Functional Class:
Hypothetical  

Gene Ontology:

Pathway: pathway table

Primary Evidence:
Zhang Y, Wang T, Chen W, Yilmaz O, Park Y, Jung IY, Hackett M, Lamont RJ.
Differential protein expression by Porphyromonas gingivalis in response to secreted epithelial cell components.
Proteomics. 2005 Jan;5(1):198-211.
PMID: 15619293

Comment:
TIGR ID: PG2227

Human Oral Microbiome Database:
View in HOMD Genome Viewer

Blast Summary:  PSI-Blast Search
This sequence corresponds to 34398107 in Genbank.


Top Blast Hits:  Updated monthly
Click here to view the entire PsiBlast results.
 gi|34541789|ref|NP_906268.1|  hypothetical protein PG2227 [P...   376   e-103
 gi|148927856|ref|ZP_01811275.1|  conserved hypothetical prot...   128   3e-28
 gi|124002615|ref|ZP_01687467.1|  hypothetical protein M23134...    88   4e-16
 gi|126646095|ref|ZP_01718612.1|  hypothetical protein ALPR1_...    81   4e-14
 gi|88712036|ref|ZP_01106123.1|  hypothetical protein FB2170_...    62   2e-08
 gi|89889698|ref|ZP_01201209.1|  hypothetical protein BBFL7_0...    60   8e-08
 gi|67942286|ref|ZP_00534116.1|  conserved hypothetical prote...    60   1e-07
 gi|91215339|ref|ZP_01252310.1|  hypothetical protein P700755...    59   2e-07
 gi|150025702|ref|YP_001296528.1|  hypothetical protein FP165...    55   2e-06
 gi|83815442|ref|YP_444890.1|  tetratricopeptide repeat domai...    55   3e-06


InterPro Summary:  InterProScan

noIPR
unintegrated
unintegrated
signalp [1-23]? NA signalp signal-peptide signal-peptide
tmhmm [9-29]? NA tmhmm transmembrane_regions transmembrane_regions


COGS Summary:  COGS Search
No hit to the COGs database.
Blocks Summary:  Blocks Search
No significant hit to the Blocks database.

 ProDom Summary:  Protein Domain Search
No significant hit to the ProDom database.

Paralogs:  Local Blast Search
No paralogs found in P. gingivalis.

Pfam Summary:  Pfam Search
No significant hits to the Pfam 11.0 database

 Structural Feature(s):
Feature Type  Start  Stop
gram negative signal  
1  
29
cleavable signal  
1  
25
non-globular  
84  
123

Top PDB Hits:
No significant hits to the PDB database (E-value < E-10).

Gene Protein Sequence:
MKTFKRIALLLVAGFAGLCATSAQGTAYAEVMNRKVAALDSVPPTEYATL
AADFSRIAAVEGSDWMAAYYTAYCRIIPAFGNPSEADRLCEEAESMLSKA
ESLGGDLSEIACLRSMAASARLLVNPQERWQTYGAESSRQLAVALEANPA
NPRAYFLQAQSLLYTPAQFGGGKDKALPFAEKSVSCYAAATVSPAYAPHW
GEQQARQLLMLCKAETQE

Gene Nucleotide Sequence:  Sequence Viewer
ATGAAAACTTTCAAAAGAATCGCCCTGCTCCTCGTCGCAGGCTTTGCAGG
GCTGTGTGCAACATCCGCACAAGGGACGGCTTATGCCGAAGTGATGAATC
GAAAAGTAGCTGCTCTGGACAGTGTGCCACCGACGGAATATGCCACACTG
GCTGCGGACTTTTCCCGGATAGCAGCCGTGGAAGGATCCGACTGGATGGC
TGCTTATTATACCGCCTACTGCCGGATAATCCCGGCCTTCGGCAACCCCT
CTGAGGCCGATCGGCTATGCGAAGAAGCCGAATCCATGCTGAGCAAAGCG
GAATCCCTCGGCGGAGATCTGTCCGAAATAGCCTGTTTGCGTAGCATGGC
CGCCTCGGCACGCCTTTTGGTCAATCCGCAAGAACGCTGGCAGACATATG
GAGCAGAGAGCAGCCGACAGTTGGCTGTCGCCCTTGAAGCCAACCCTGCT
AATCCGCGAGCCTACTTCCTGCAGGCCCAAAGCCTGCTGTACACCCCTGC
GCAGTTCGGAGGGGGCAAGGACAAGGCCCTCCCTTTTGCCGAGAAGAGCG
TGTCCTGCTATGCTGCGGCCACAGTGTCGCCTGCCTATGCTCCGCACTGG
GGAGAGCAGCAAGCACGCCAACTCCTAATGCTTTGCAAGGCAGAAACCCA
AGAG

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