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PDB Table for Human Herpesvirus 2
| Gene ID | Name | PDB Hits |
| HHVTW002 | alpha0 ICP0 RL2 | Round 1 hit structure pdb|1CHC|1CHC (Equine herpesvirus-1 C3HC4, or ring domain) with score 46.1, E value 0.001000 (17 of 43 aa matching).
|
| HHVTW004 | UL2 | Round 1 hits to pdb|1LAU|1LAU-E uracil-DNA glycosylase DNA (5'-d(pTpTpT)-3') score 448.0, E value 0 and pdb|1UDI|1UDI-E uracil-DNA glycosylaseuracil-DNA glycosylase, score 447, E value 0. |
| HHVTW006 | UL4 | Round 5 hit the structure pdb|1WGT|1WGT-A Wheat germ agglutinin (isolectin 3) with score 54.8, E value 6e-07.
Round 5 also hit pdb|1TPG|1TPG t-plasminogen activator f1-gMutant with score 50.9, E value 8e-06. |
| HHVTW010 | UL8 | Round 4 hit (E value 2e-15) to the structure pdb|2KTQ|2KTQ-A open ternary complex of the large fragment of DNA polymerase I.
Round 4 hit (E value 5e-07) to pdb|1C9R|1C9R-B the crystal structure of MET184ILE mutant of HIV-1 reverse transcriptase. |
| HHVTW015 | UL13 | Round 3 hit to structure pdb|1BI7|1BI7-A mechanism of G1 cyclin dependent kinase (Score 104.0, E value 2e-21). |
| HHVTW026 | UL23 | Round 1 hit: pdb|1KIM|1KIM-A Crystal struct of thymidine kinase from HHV2, score 549.
Round 1 hit: pdb|1QHI|1QHI-A HSV I thymidine kinase, score 549. Round 1 hit: pdb|1KI6|1KI6-A Thymidine kinase from HHV2, score 526. |
| HHVTW028 | UL26 | Round 1 hit to pdb|1AT3|1AT3-A Herpes simplex virus type II protease, score 450.0, E value 0e+00.
Round 1 hit to pdb|1VZV|1VZV Structure of Varicella-Zoster virus protease, Score 211.0, E value 1e-53. |
| HHVTW033 | UL30 | Round 1 hit pdb|1TGO|1TGO-A Thermostable B type DNA polymerase from Thermococcus gorgonarius, Score 111, E value 4e-23. Round 1 also hit pdb|1QQC|1QQC-A Crystal structure of an archaebacterial DNA polymerase D.tok, Score 109, E value 1e-22.
|
| HHVTW042 | UL39 | Round 1 hits to ribonucleotide reductase from 3 E.coli mutants: pdb|6R1R|6R1R-A E.coli E441D, score 112, E value 2e-23, pdb|7R1R|7R1R-A E.coli E441Q, score 112, E value 2e-23, and pdb|5R1R|5R1R-A E.coli E441A, score 111, E value 5e-23. |
| HHVTW043 | UL40 | Round 1 hit pdb|1XSM|1XSM ribonucleotide reductase r2(r2)biological_unit, Score: 91.7, E value: 8e-18.
Round 2 hit pdb|1R2F|1R2F-A Ribonucleotide reductase R2F protein Score: 176.0, E value: 3e-43. |
| HHVTW044 | UL41 | Residues 176-266 made a round 3 hit to pdb|1A76|1A76 Flap endonuclease-1 from Methanococus jannaschii w Score: 51.5, E value: 2e-05. |
| HHVTW047 | UL44 | UL44 hit more than 150 structures in PDB. The highest score (137.0) and E-value (2e-31) are to the crystal structure of a human IGM rheumatoid factor fab in complex with its autoantigen IGG FC, pdb|1ADQ|1ADQ-L. |
| HHVTW051 | UL48 | Round 1 hit finds residues 57-412 are 82% similar to pdb|16VP|16VP-A Conserved core of the Herpes simplex virus, w Score: 589.0 and E-value 0e+00. |
| HHVTW054 | UL50 | Round 2 hit three structures: (pdb|1DUC|1DUC) EIAV dUTPase dUDP/strontium complex, score 120, E value 2e-26, (pdb|1DUT|1DUT-A) FIV dUTP pyrophosphatase, score 109, E value 5e-23 and (pdb|1DUD|1DUD) deoxyuridine 5'-triphosphate nucleo...(50.4, 2e-05). |
| HHVTW061 | alpha0 RL2 | Round 1 hit structure pdb|1CHC|1CHC (Equine herpesvirus-1 C3HC4, or ring domain) with score 46.1, E value 0.001000 (17 of 43 aa matching).
|
| HHVTW066 | US3 | Round 1 hit structure pdb|1BI7|1BI7-A (E value 2e-13) complex (kinase/anti-oncogene).
Round 1 also hit structure pdb|1JST|1JST-A (E value 1e-12) complex (protein kinase/cyclin). |
| HHVTW074 | US10 | Round 2 hit pdb|1DEQ|1DEQ-A Crystal structure of modified
Bovine fibrinogen with score 46.5, E value 3e-04. |