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Repeat Table for Actinobacillus actinomycetemcomitans HK1651

The tandem repeats listed in the table were identified using the Tandem Repeat Finder by G. Genson
"Tandem repeats finder: a program to analyze DNA sequences" Nucleic Acids Research (1999) Vol. 27, No. 2, pp. 573-580.
Repeat Name Repeat Type Copy # Location Length Gene & Intergenic Id(s) Definitions-Comments
AA-TR-1 tandem 2.00 297206,297235 15 AA00434   VgrG-like protein (Rhs accessory genetic element) 
AA-TR-2 tandem 2.00 297218,297264 24 AA00434   VgrG-like protein (Rhs accessory genetic element) 
AA-TR-3 tandem 2.60 351392,351475 32 IGR0321  intergenic region 
AA-TR-4 tandem 3.00 439114,439236
439234,439475
120 AA00640 , AA00639 , AA00640 , AA00639   hypothetical protein
conserved hypothetical protein
hypothetical protein
conserved hypothetical protein 
AA-TR-5 tandem 3.50 452229,452270 12 AA00659   heat shock protein 
AA-TR-6 tandem 3.10 505307,505344
505344,505363
18 AA00738 , IGR0479, IGR0479  hypothetical protein
intergenic region 
AA-TR-7 tandem 3.10 648359,648386 9 AA00938   L-xylulokinase 
AA-TR-8 tandem 2.10 773110,773159 24 AA01127   energy transducer protein 
AA-TR-9 tandem 4.20 773119,773142
773142,773168
12 AA01127 , AA01127   energy transducer protein
energy transducer protein 
AA-TR-10 tandem 2.20 773128,773179 24 AA01127   energy transducer protein 
AA-TR-11 tandem 2.10 799613,799645 16 AA01167   glucose-6-phosphate 1-dehydrogenase 
AA-TR-12 tandem 2.50 971765,971795 12 IGR0947  intergenic region 
AA-TR-13 tandem 2.80 993523,993555 12 AA01477   type I restriction enzyme R protein 
AA-TR-14 tandem 2.00 1003992,1004021 15 IGR0976  intergenic region 
AA-TR-15 tandem 2.80 1219109,1219141 12 AA01808   electron transport complex protein 
AA-TR-16 tandem 5.00 1288064,1288134
1288133,1288177
22 AA01911 , AA01911   hypothetical protein
hypothetical protein 
AA-TR-17 tandem 2.40 1469776,1469830
1469829,1469839
27 AA02147 , IGR1396, IGR1396  hypothetical protein
intergenic region 
AA-TR-18 tandem 2.40 1501308,1501338 13 AA02204 , AA02205   hypothetical protein
short chain dehydrogenase/reductase 
AA-TR-19 tandem 2.10 1563013,1563043 15 IGR1490  intergenic region 
AA-TR-20 tandem 3.10 1605058,1605479 134 AA02347   immunoglobulin A1 protease precursor 
AA-TR-21 tandem 2.00 1821365,1821394 15 AA02610 , IGR1718  acyl-CoA thioesterase II
intergenic region 
AA-TR-22 tandem 2.10 1836557,1836590
1836589,1836589
17 AA02637 , AA02637   conserved hypothetical protein (possible membrane protein)
conserved hypothetical protein (possible membrane protein) 
AA-TR-23 tandem 3.20 1880569,1880636 21 IGR1772  intergenic region 
AA-TR-24 tandem 2.00 1944646,1944681 18 AA02780   protein-export membrane protein 
AA-TR-25 tandem 2.10 1974702,1974759 27 AA02806   leukotoxin A; hemolysin A 
AA-TR-26 tandem 2.80 1987888,1987991
1987990,1988167
101 IGR1861, IGR1861  intergenic region 
AA-TR-27 tandem 2.90 1990644,1990766 42 AA02832   outer membrane integrity protein 
AA-TR-28 tandem 2.40 1990689,1990731 18 AA02832   outer membrane integrity protein 
AA-TR-29 tandem 2.00 1990695,1990738
1990737,1990779
1990779,1990779
43 AA02832 , AA02832 , AA02832   outer membrane integrity protein
outer membrane integrity protein
outer membrane integrity protein 
AA-TR-30 tandem 3.20 2023624,2023652 9 AA02886   OBG-related GTP-binding protein 
pVT-TR-1 tandem 1.90 13184,13229 24 pVT23 , IGRp16  conserved hypothetical protein taken from plasmid pVT745 in A.actinomycetemcomitans
intergenic region 


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