The tandem repeats listed in the table were identified using the Tandem Repeat Finder by G. Genson
"Tandem repeats finder: a program to analyze DNA sequences" Nucleic Acids Research (1999) Vol. 27, No. 2, pp. 573-580.

Repeat Name	Copy #	Location	Length	Gene & Intergenic Id(s)	Definitions-Comments
tandem 1	2.70	444,484		HHVTW001	anti-host defense factor, ICP34.5 (RL1_HSV2H)
tandem 2	2.80	480,546		HHVTW001	anti-host defense factor, ICP34.5 (RL1_HSV2H)
tandem 3	6.70	943,1070		HHVTW001 , HHVTW001.1	anti-host defense factor, ICP34.5 (RL1_HSV2H) unknown
tandem 4	7.00	1245,1287		HHVTW001	anti-host defense factor, ICP34.5 (RL1_HSV2H)
tandem 5	2.40	1635,1730		IGR1.1	intergenic region [This region contains one tandem nucleotide repeat with genomic coordinates 1635-1730, period/unit size 40, copy # 2.4, with 82% matches and no inserts/deletes.]
tandem 6	12.50	3471,3607		HHVTW002	promiscuous transactivator, cellular homolog, ICP0, VMW118 (ICP0_HSV2H)
tandem 7	7.90	4653,4770		HHVTW002	promiscuous transactivator, cellular homolog, ICP0, VMW118 (ICP0_HSV2H)
tandem 8	38.30	4656,4770		HHVTW002	promiscuous transactivator, cellular homolog, ICP0, VMW118 (ICP0_HSV2H)
tandem 9	2.30	6394,6427		IGR2	intergenic region [This region contains five tandem nucleotide repeats with genome coordinates: 1) 6394-6427, period/unit size 15, copy # 2.3, with 94% matches and no insert/deletes. 2) 7990-8042, period/unit size 19, copy # 2.7, with 97% matches and one insert/detete. 3) 8247-8271, period/unit size 2, copy # 12.5 with 100% matches and no insert/deletes. 4) 9043-9193, period/unit size 21, copy # 7.2 with 99% matches and no insets/deletes. 5) 9242-9297, period/unit size 17, copy # 3.3 with 100% matches and no insert/deletes.]
tandem 10	2.70	7990,8042		IGR2	intergenic region [This region contains five tandem nucleotide repeats with genome coordinates: 1) 6394-6427, period/unit size 15, copy # 2.3, with 94% matches and no insert/deletes. 2) 7990-8042, period/unit size 19, copy # 2.7, with 97% matches and one insert/detete. 3) 8247-8271, period/unit size 2, copy # 12.5 with 100% matches and no insert/deletes. 4) 9043-9193, period/unit size 21, copy # 7.2 with 99% matches and no insets/deletes. 5) 9242-9297, period/unit size 17, copy # 3.3 with 100% matches and no insert/deletes.]
tandem 11	12.50	8247,8271		IGR2	intergenic region [This region contains five tandem nucleotide repeats with genome coordinates: 1) 6394-6427, period/unit size 15, copy # 2.3, with 94% matches and no insert/deletes. 2) 7990-8042, period/unit size 19, copy # 2.7, with 97% matches and one insert/detete. 3) 8247-8271, period/unit size 2, copy # 12.5 with 100% matches and no insert/deletes. 4) 9043-9193, period/unit size 21, copy # 7.2 with 99% matches and no insets/deletes. 5) 9242-9297, period/unit size 17, copy # 3.3 with 100% matches and no insert/deletes.]
tandem 12	7.20	9043,9193		IGR2	intergenic region [This region contains five tandem nucleotide repeats with genome coordinates: 1) 6394-6427, period/unit size 15, copy # 2.3, with 94% matches and no insert/deletes. 2) 7990-8042, period/unit size 19, copy # 2.7, with 97% matches and one insert/detete. 3) 8247-8271, period/unit size 2, copy # 12.5 with 100% matches and no insert/deletes. 4) 9043-9193, period/unit size 21, copy # 7.2 with 99% matches and no insets/deletes. 5) 9242-9297, period/unit size 17, copy # 3.3 with 100% matches and no insert/deletes.]
tandem 13	3.30	9242,9297		IGR2	intergenic region [This region contains five tandem nucleotide repeats with genome coordinates: 1) 6394-6427, period/unit size 15, copy # 2.3, with 94% matches and no insert/deletes. 2) 7990-8042, period/unit size 19, copy # 2.7, with 97% matches and one insert/detete. 3) 8247-8271, period/unit size 2, copy # 12.5 with 100% matches and no insert/deletes. 4) 9043-9193, period/unit size 21, copy # 7.2 with 99% matches and no insets/deletes. 5) 9242-9297, period/unit size 17, copy # 3.3 with 100% matches and no insert/deletes.]
tandem 14	2.20	22419,22444		HHVTW012	ori-binding protein
tandem 15	3.00	53219,53251		IGR21	intergenic region [This region contains one tandem nucleotide repeat with genome coordinates 53219 - 53251, period/unit size 11, with copy # 3, 100% matches and no insert/deletes.]
tandem 16	3.10	56029,56056		HHVTW030 , HHVTW029.1	virion glycoprotein B, gB, VP7 (VGLB_HSV2H) unknown
tandem 17	8.20	65274,65322		HHVTW033	DNA-directed polymerase cellular homolog
tandem 18	11.30	72098,72266		HHVTW039	very large tegument protein, ICP1/2
tandem 19	2.10	79657,79686		HHVTW039	very large tegument protein, ICP1/2
tandem 20	13.40	106045,106165		IGR40	intergenic region [This region contains one tandem nucleotide repeat with genome coordinates 106045 - 106165, with period/unit size 9, copy # 13.4, 100% matches and no inserts/deletes.]
tandem 21	7.20	118057,118207		IGR48	intergenic region [This region contains four tandem nucleotide repeats at genome coordinates: 1) 118057 - 118207 with period/unit size 21, copy # 7.2, 99% matches and no inserts/deletes. 2) 118979 - 119003 with perios/unit size 2, copy # 12.5, 100% matches, and no inserts/deletes. 3) 119208 - 119260 with period/unit size 19, copy # 2.7, 97% matches and one insert/delete. 4) 120823 - 120856 with period/unit size 15, copy # 2.3, 94% matches and no inserts/deletes. ]
tandem 22	12.50	118979,119003		IGR48	intergenic region [This region contains four tandem nucleotide repeats at genome coordinates: 1) 118057 - 118207 with period/unit size 21, copy # 7.2, 99% matches and no inserts/deletes. 2) 118979 - 119003 with perios/unit size 2, copy # 12.5, 100% matches, and no inserts/deletes. 3) 119208 - 119260 with period/unit size 19, copy # 2.7, 97% matches and one insert/delete. 4) 120823 - 120856 with period/unit size 15, copy # 2.3, 94% matches and no inserts/deletes. ]
tandem 23	2.70	119208,119260		IGR48	intergenic region [This region contains four tandem nucleotide repeats at genome coordinates: 1) 118057 - 118207 with period/unit size 21, copy # 7.2, 99% matches and no inserts/deletes. 2) 118979 - 119003 with perios/unit size 2, copy # 12.5, 100% matches, and no inserts/deletes. 3) 119208 - 119260 with period/unit size 19, copy # 2.7, 97% matches and one insert/delete. 4) 120823 - 120856 with period/unit size 15, copy # 2.3, 94% matches and no inserts/deletes. ]
tandem 24	2.30	120823,120856		IGR48	intergenic region [This region contains four tandem nucleotide repeats at genome coordinates: 1) 118057 - 118207 with period/unit size 21, copy # 7.2, 99% matches and no inserts/deletes. 2) 118979 - 119003 with perios/unit size 2, copy # 12.5, 100% matches, and no inserts/deletes. 3) 119208 - 119260 with period/unit size 19, copy # 2.7, 97% matches and one insert/delete. 4) 120823 - 120856 with period/unit size 15, copy # 2.3, 94% matches and no inserts/deletes. ]
tandem 25	38.90	122480,122594		HHVTW061	promiscuous transactivator, cellular homolog, VMW118, ICP0
tandem 26	7.90	122480,122597		HHVTW061	promiscuous transactivator, cellular homolog, VMW118, ICP0
tandem 27	12.50	123643,123779		HHVTW061	promiscuous transactivator, cellular homolog, VMW118, ICP0
tandem 28	2.70	125509,125615		IGR49	intergenic region [This region contains one tandem nucleotide repeat at genome coordinates 125509 - 125615 with period(unit size) 40, copy # 2.7, 80% matches and no inserts/deletes.]
tandem 29	7.00	125963,126005		HHVTW062	anti-host defense factor, ICP34.5 (RL1_HSV2H)
tandem 30	6.70	126180,126307		HHVTW062 , HHVTW061.1	anti-host defense factor, ICP34.5 (RL1_HSV2H) unknown
tandem 31	2.80	126704,126770		HHVTW062	anti-host defense factor, ICP34.5 (RL1_HSV2H)
tandem 32	2.70	126766,126806		HHVTW062	anti-host defense factor, ICP34.5 (RL1_HSV2H)
tandem 33	2.30	127173,127237		IGR50	intergenic region [Bases 126,996-127,249 are the inverted, internal "a'" segment of a long termainal repeat of form a...........a'...a This region contains three tandem nucleotide repeats with genome coordinates: 1) 127173 - 127237 with period(unit size) 28, copy # 2.3, 83% matches and no inserts/deletes. 2) 127455 - 127490 with period(unit size) 15, copy # 2.4, 100% matches and no inserts/deletes. 3) 127672 - 127914 with period(unit size) 15, copy # 16.2, 100% matches and no inserts/deletes.]
tandem 34	2.40	127455,127490		IGR50	intergenic region [Bases 126,996-127,249 are the inverted, internal "a'" segment of a long termainal repeat of form a...........a'...a This region contains three tandem nucleotide repeats with genome coordinates: 1) 127173 - 127237 with period(unit size) 28, copy # 2.3, 83% matches and no inserts/deletes. 2) 127455 - 127490 with period(unit size) 15, copy # 2.4, 100% matches and no inserts/deletes. 3) 127672 - 127914 with period(unit size) 15, copy # 16.2, 100% matches and no inserts/deletes.]
tandem 35	16.20	127672,127914		IGR50	intergenic region [Bases 126,996-127,249 are the inverted, internal "a'" segment of a long termainal repeat of form a...........a'...a This region contains three tandem nucleotide repeats with genome coordinates: 1) 127173 - 127237 with period(unit size) 28, copy # 2.3, 83% matches and no inserts/deletes. 2) 127455 - 127490 with period(unit size) 15, copy # 2.4, 100% matches and no inserts/deletes. 3) 127672 - 127914 with period(unit size) 15, copy # 16.2, 100% matches and no inserts/deletes.]
tandem 36	11.70	131514,131548		HHVTW063	positive and negative gene regulator, ICP4
tandem 37	2.10	132620,132684 132823,132910		IGR51, IGR51	intergenic region
tandem 38	32.00	133227,133644		IGR51	intergenic region
tandem 39	33.50	133376,133631		IGR51	intergenic region
tandem 40	1.90	137624,137652		HHVTW066	serine/threonine protein kinase cellular homolog (KR1_HSV2H)
tandem 41	2.70	144419,144448		HHVTW071	glycoprotein E, gE
tandem 42	35.60	148097,148366		IGR62	intergenic region [This region contains three tandem nucleotide repeats at genome coordinates: 1) 148097 - 148366 with period(unit size) 8, copy # 35.6, 85% matches and 28 inserts/deletes. 2) 148098 - 148483 with period(unit size) 16, copy # 28.9, 85% matches and 60 inserts/deletes. 3) 148832 - 149119 with period(unit size) 138, copy # 2.1 98% matches and 3 inserts/deletes.]
tandem 43	28.90	148098,148483		IGR62	intergenic region [This region contains three tandem nucleotide repeats at genome coordinates: 1) 148097 - 148366 with period(unit size) 8, copy # 35.6, 85% matches and 28 inserts/deletes. 2) 148098 - 148483 with period(unit size) 16, copy # 28.9, 85% matches and 60 inserts/deletes. 3) 148832 - 149119 with period(unit size) 138, copy # 2.1 98% matches and 3 inserts/deletes.]
tandem 44	2.10	148832,148896 149037,149119		IGR62, IGR62	This region contains three tandem nucleotide repeats at genome coordinates: 1) 148097 - 148366 with period(unit size) 8, copy # 35.6, 85% matches and 28 inserts/deletes. 2) 148098 - 148483 with period(unit size) 16, copy # 28.9, 85% matches and 60 inserts/deletes. 3) 148832 - 149119 with period(unit size) 138, copy # 2.1 98% matches and 3 inserts/deletes. intergenic region [This region contains three tandem nucleotide repeats at genome coordinates: 1) 148097 - 148366 with period(unit size) 8, copy # 35.6, 85% matches and 28 inserts/deletes. 2) 148098 - 148483 with period(unit size) 16, copy # 28.9, 85% matches and 60 inserts/deletes. 3) 148832 - 149119 with period(unit size) 138, copy # 2.1 98% matches and 3 inserts/deletes.]
tandem 45	11.70	150194,150228		HHVTW077	positive and negative gene regulator, ICP4
tandem 46	16.20	153828,154070		IGR63	intergenic region [Bases 154,493 - 154,746 (ie the last 254 bases of the genome) are the direct "a" segment of the long terminal repeat of form a..........a'...a This region contains two tandem nucleotide repeats at genome coordinates: 1) 153828 - 154070 with period(unit size) 15, copy # 16.2, 100% matches and no inserts/deletes and 2) 154252 - 154287 with period(unit size) 15, copy # 2.4, 100% matches and no inserts/deletes.]
tandem 47	2.40	154252,154287		IGR63	intergenic region [Bases 154,493 - 154,746 (ie the last 254 bases of the genome) are the direct "a" segment of the long terminal repeat of form a..........a'...a This region contains two tandem nucleotide repeats at genome coordinates: 1) 153828 - 154070 with period(unit size) 15, copy # 16.2, 100% matches and no inserts/deletes and 2) 154252 - 154287 with period(unit size) 15, copy # 2.4, 100% matches and no inserts/deletes.]