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The tandem repeats listed in the table were identified using the Tandem Repeat Finder by G. Genson
"Tandem repeats finder: a program to analyze DNA sequences" Nucleic Acids Research (1999) Vol. 27, No. 2, pp. 573-580.
| Repeat Name | Repeat Type | Copy # | Location | Length | Gene & Intergenic Id(s) | Definitions-Comments |
| 1  | tandem | 3.30 | 15344,15378 | 11 | IGRi13  | intergenic region [Davison et al. locate a fragment of UL128 and define four small new genes they name UL148A, UL148B, UL148C and UL148D within this region between UL130 and UL150 (The human cytomegalovirus genome revisited: comparison with the chimpanzee cytomegalovirus genome, J Gen Virol. 2003 Jan;84,Pt 1:17-28).]  |
| 2  | tandem | 3.00 | 355,392 | 13 | HCMV000.5   | unknown, HCMV specific  |
| 3  | tandem | 2.10 | 400,428 | 14 | HCMV000.5   | unknown, HCMV specific  |
| 4  | tandem | 15.20 | 339,512 | 11 | HCMV000.5   | unknown, HCMV specific  |
| 5  | tandem | 3.50 | 18751,18824 | 21 | HCMV025   | glycoprotein  |
| 6  | tandem | 2.20 | 33764,33790 | 12 | HCMV041   | unknown, herpesvirus specific UL27 protein  |
| 7  | tandem | 3.40 | 93677,93804 | 37 | HCMV074 , HCMV075 , IGR54  | unknown, HCMV specific unknown, HCMV specific intergenic region [oriLyt maps to a large region between 91,751 and 93,299, starting in IGR53, spanning UL60 and IGR54 and ending in UL61.]  |
| 8  | tandem | 2.50 | 112266,112310 | 18 | HCMV091   | DNA packaging protein  |
| 9  | tandem | 2.20 | 118150,118190 | 19 | HCMV094 , HCMV095   | protease and minor capsid scaffold protein UL80 major capsid scaffold protein  |
| 10  | tandem | 2.70 | 171855,171886 | 12 | HCMV139   | immediate-early transcriptional regulator  |
| 11  | tandem | 2.10 | 189970,189998 | 14 | HCMV164   | unknown, HCMV specific  |
| 12  | tandem | 3.10 | 190011,190050 | 13 | HCMV164   | unknown, HCMV specific  |
| 13  | tandem | 14.60 | 189886,190054 | 12 | HCMV164   | unknown, HCMV specific  |
| 14  | tandem | 3.10 | 195809,195899 | 29 | HCMV169   | unknown, HCMV specific  |
| 15  | tandem | 3.00 | 228296,228331 | 12 | HCMV202   | transcriptional transactivator, tegument protein, pTRS1  |
| 16  | tandem | 3.00 | 230064,230101 | 13 | HCMV203   | unknown, HCMV specific protein J1  |
| 17  | tandem | 2.10 | 230109,230137 | 14 | HCMV203   | unknown, HCMV specific protein J1  |
| 18  | tandem | 15.20 | 230048,230221 | 11 | HCMV203   | unknown, HCMV specific protein J1  |
| 19  | direct | 6.00 | 390,414 482,506 189892,189916 189984,190008 230099,230123 230191,230215 |
25 | HCMV000.5 , HCMV000.5 , HCMV164 , HCMV164 , HCMV203 , HCMV203   | unknown, HCMV specific unknown, HCMV specific unknown, HCMV specific unknown, HCMV specific unknown, HCMV specific protein J1 unknown, HCMV specific protein J1  |
| 20  | direct | 9.00 | 390,409 426,445 482,501 189867,189916 189953,189972 189989,190008 230099,230118 230135,230154 230191,230210 |
20 | HCMV000.5 , HCMV000.5 , HCMV000.5 , HCMV164 , HCMV164 , HCMV164 , HCMV203 , HCMV203 , HCMV203   | unknown, HCMV specific unknown, HCMV specific unknown, HCMV specific unknown, HCMV specific unknown, HCMV specific unknown, HCMV specific unknown, HCMV specific protein J1 unknown, HCMV specific protein J1 unknown, HCMV specific protein J1  |
| 22  | direct | 2.00 | 77696,77715 178161,178180 |
20 | HCMV067 , HCMV149   | structural protein unknown, HCMV/CCMV specific  |
| 23  | direct | 2.00 | 174957,174977 175150,175170 |
21 | IGR100, IGR100  | intergenic region  |
| A | terminal | 3.00 | 1,578 189821,190398 229710,230287 |
578 | HCMV000.5 , HCMV164 , HCMV203   | unknown, HCMV specific unknown, HCMV specific unknown, HCMV specific protein J1  |
| 25  | direct | 4.00 | 1,25 554,578 189820,189844 190373,190397 229710,229734 230263,230287 |
25 | HCMV000.5 , HCMV000.5 , HCMV164 , HCMV164 , HCMV203 , HCMV203   | unknown, HCMV specific unknown, HCMV specific unknown, HCMV specific unknown, HCMV specific unknown, HCMV specific protein J1 unknown, HCMV specific protein J1  |
| 27  | direct | 2.00 | 150104,150124 150149,150169 |
21 | IGR81, IGR81  | intergenic region  |
| 29  | direct | 2.00 | 41689,41708 146176,146195 |
20 | HCMV046 , HCMV115   | large structural phosphoprotein, tegument protein pp150 envelope glycoprotein UL100  |
| TRL-IRL | inverted | 2.00 | 579,11247 179151,189819 |
  | HCMV001 , HCMV002 , HCMV003 , HCMV004 , HCMV005 , HCMV006 , HCMV007 , HCMV008 , HCMV009 , HCMV010 , HCMV011 , HCMV012 , HCMV013 , HCMV014 , HCMV000.5 , HCMV004.5 , IGR1, IGR2, IGR3, IGR4, IGR5, IGR6, IGR7, IGR8, IGR9, IGR3.1, IGR1.1, HCMV150 , HCMV151 , HCMV152 , HCMV153 , HCMV154 , HCMV155 , HCMV156 , HCMV157 , HCMV158 , HCMV159 , HCMV160 , HCMV161 , HCMV162 , HCMV163 , HCMV164 , IGR105, IGR106, IGR107, IGR108, IGR109, IGR110, IGR111, IGR112, IGR113, IGR114, IGR104.1  | unknown, HCMV specific unknown, HCMV specific unknown, HCMV specific unknown, HCMV specific unknown, HCMV specific unknown, HCMV specific unknown, HCMV specific unknown, HCMV specific unknown, HCMV specific structural envelope glycoprotein, gpTRL10 vFCgamma receptor gp34 cellular homolog, gpTRL11 IgG Fc-binding glycoprotein N terminus of glycoprotein C terminus of glycoprotein unknown, HCMV specific RL5 fragment, likely non-functional unknown, HCMV specific unknown, HCMV specific glycoprotein IgG Fc-binding glycoprotein possible glycoprotein unknown, HCMV specific unknown, HCMV specific unknown, HCMV specific unknown, HCMV specific unknown, HCMV specific unknown, HCMV specific unknown, HCMV specific unknown, HCMV specific unknown, HCMV/CCMV specific unknown, HCMV specific intergenic region intergenic region intergenic region intergenic region intergenic region intergenic region intergenic region intergenic region intergenic region intergenic region intergenic region  |
| IRS-TRS | inverted | 2.00 | 190399,192343 227764,229708 |
  | HCMV164 , HCMV165 , IGR115, HCMV202 , HCMV203 , IGR147  | unknown, HCMV specific transcriptional transactivator TRS1 transcriptional transactivator, tegument protein, pTRS1 unknown, HCMV specific protein J1 intergenic region  |