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Repeat Table for Human Herpesvirus 5 Toledo

The tandem repeats listed in the table were identified using the Tandem Repeat Finder by G. Genson
"Tandem repeats finder: a program to analyze DNA sequences" Nucleic Acids Research (1999) Vol. 27, No. 2, pp. 573-580.
Repeat Name Repeat Type Copy # Location Length Gene & Intergenic Id(s) Definitions-Comments
1  tandem 3.30 15344,15378 11 IGRi13  intergenic region [Davison et al. locate a fragment of UL128 and define four small new genes they name UL148A, UL148B, UL148C and UL148D within this region between UL130 and UL150 (The human cytomegalovirus genome revisited: comparison with the chimpanzee cytomegalovirus genome, J Gen Virol. 2003 Jan;84,Pt 1:17-28).] 
2  tandem 3.00 355,392 13 HCMV000.5   unknown, HCMV specific 
3  tandem 2.10 400,428 14 HCMV000.5   unknown, HCMV specific 
4  tandem 15.20 339,512 11 HCMV000.5   unknown, HCMV specific 
5  tandem 3.50 18751,18824 21 HCMV025   glycoprotein 
6  tandem 2.20 33764,33790 12 HCMV041   unknown, herpesvirus specific UL27 protein 
7  tandem 3.40 93677,93804 37 HCMV074 , HCMV075 , IGR54  unknown, HCMV specific
unknown, HCMV specific
intergenic region [oriLyt maps to a large region between 91,751 and 93,299, starting in IGR53, spanning UL60 and IGR54 and ending in UL61.] 
8  tandem 2.50 112266,112310 18 HCMV091   DNA packaging protein 
9  tandem 2.20 118150,118190 19 HCMV094 , HCMV095   protease and minor capsid scaffold protein UL80
major capsid scaffold protein 
10  tandem 2.70 171855,171886 12 HCMV139   immediate-early transcriptional regulator 
11  tandem 2.10 189970,189998 14 HCMV164   unknown, HCMV specific 
12  tandem 3.10 190011,190050 13 HCMV164   unknown, HCMV specific 
13  tandem 14.60 189886,190054 12 HCMV164   unknown, HCMV specific 
14  tandem 3.10 195809,195899 29 HCMV169   unknown, HCMV specific 
15  tandem 3.00 228296,228331 12 HCMV202   transcriptional transactivator, tegument protein, pTRS1 
16  tandem 3.00 230064,230101 13 HCMV203   unknown, HCMV specific protein J1 
17  tandem 2.10 230109,230137 14 HCMV203   unknown, HCMV specific protein J1 
18  tandem 15.20 230048,230221 11 HCMV203   unknown, HCMV specific protein J1 
19  direct 6.00 390,414
482,506
189892,189916
189984,190008
230099,230123
230191,230215
25 HCMV000.5 , HCMV000.5 , HCMV164 , HCMV164 , HCMV203 , HCMV203   unknown, HCMV specific
unknown, HCMV specific
unknown, HCMV specific
unknown, HCMV specific
unknown, HCMV specific protein J1
unknown, HCMV specific protein J1 
20  direct 9.00 390,409
426,445
482,501
189867,189916
189953,189972
189989,190008
230099,230118
230135,230154
230191,230210
20 HCMV000.5 , HCMV000.5 , HCMV000.5 , HCMV164 , HCMV164 , HCMV164 , HCMV203 , HCMV203 , HCMV203   unknown, HCMV specific
unknown, HCMV specific
unknown, HCMV specific
unknown, HCMV specific
unknown, HCMV specific
unknown, HCMV specific
unknown, HCMV specific protein J1
unknown, HCMV specific protein J1
unknown, HCMV specific protein J1 
22  direct 2.00 77696,77715
178161,178180
20 HCMV067 , HCMV149   structural protein
unknown, HCMV/CCMV specific 
23  direct 2.00 174957,174977
175150,175170
21 IGR100, IGR100  intergenic region 
A terminal 3.00 1,578
189821,190398
229710,230287
578 HCMV000.5 , HCMV164 , HCMV203   unknown, HCMV specific
unknown, HCMV specific
unknown, HCMV specific protein J1 
25  direct 4.00 1,25
554,578
189820,189844
190373,190397
229710,229734
230263,230287
25 HCMV000.5 , HCMV000.5 , HCMV164 , HCMV164 , HCMV203 , HCMV203   unknown, HCMV specific
unknown, HCMV specific
unknown, HCMV specific
unknown, HCMV specific
unknown, HCMV specific protein J1
unknown, HCMV specific protein J1 
27  direct 2.00 150104,150124
150149,150169
21 IGR81, IGR81  intergenic region 
29  direct 2.00 41689,41708
146176,146195
20 HCMV046 , HCMV115   large structural phosphoprotein, tegument protein pp150
envelope glycoprotein UL100 
TRL-IRL inverted 2.00 579,11247
179151,189819
  HCMV001 , HCMV002 , HCMV003 , HCMV004 , HCMV005 , HCMV006 , HCMV007 , HCMV008 , HCMV009 , HCMV010 , HCMV011 , HCMV012 , HCMV013 , HCMV014 , HCMV000.5 , HCMV004.5 , IGR1, IGR2, IGR3, IGR4, IGR5, IGR6, IGR7, IGR8, IGR9, IGR3.1, IGR1.1, HCMV150 , HCMV151 , HCMV152 , HCMV153 , HCMV154 , HCMV155 , HCMV156 , HCMV157 , HCMV158 , HCMV159 , HCMV160 , HCMV161 , HCMV162 , HCMV163 , HCMV164 , IGR105, IGR106, IGR107, IGR108, IGR109, IGR110, IGR111, IGR112, IGR113, IGR114, IGR104.1  unknown, HCMV specific
unknown, HCMV specific
unknown, HCMV specific
unknown, HCMV specific
unknown, HCMV specific
unknown, HCMV specific
unknown, HCMV specific
unknown, HCMV specific
unknown, HCMV specific
structural envelope glycoprotein, gpTRL10
vFCgamma receptor gp34 cellular homolog, gpTRL11
IgG Fc-binding glycoprotein
N terminus of glycoprotein
C terminus of glycoprotein
unknown, HCMV specific
RL5 fragment, likely non-functional
unknown, HCMV specific
unknown, HCMV specific
glycoprotein
IgG Fc-binding glycoprotein
possible glycoprotein
unknown, HCMV specific
unknown, HCMV specific
unknown, HCMV specific
unknown, HCMV specific
unknown, HCMV specific
unknown, HCMV specific
unknown, HCMV specific
unknown, HCMV specific
unknown, HCMV/CCMV specific
unknown, HCMV specific
intergenic region
intergenic region
intergenic region
intergenic region
intergenic region
intergenic region
intergenic region
intergenic region
intergenic region
intergenic region
intergenic region 
IRS-TRS inverted 2.00 190399,192343
227764,229708
  HCMV164 , HCMV165 , IGR115, HCMV202 , HCMV203 , IGR147  unknown, HCMV specific
transcriptional transactivator TRS1
transcriptional transactivator, tegument protein, pTRS1
unknown, HCMV specific protein J1
intergenic region 


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