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Repeat Table for Human Herpesvirus 5 Toledo

The tandem repeats listed in the table were identified using the Tandem Repeat Finder by G. Genson
"Tandem repeats finder: a program to analyze DNA sequences" Nucleic Acids Research (1999) Vol. 27, No. 2, pp. 573-580.
Repeat Name Copy # Location Length Gene & Intergenic Id(s) Definitions-Comments
19  6.00 390,414
482,506
189892,189916
189984,190008
230099,230123
230191,230215
25 HCMV000.5 , HCMV000.5 , HCMV164 , HCMV164 , HCMV203 , HCMV203   unknown, HCMV specific
unknown, HCMV specific
unknown, HCMV specific
unknown, HCMV specific
unknown, HCMV specific protein J1
unknown, HCMV specific protein J1 
20  9.00 390,409
426,445
482,501
189867,189916
189953,189972
189989,190008
230099,230118
230135,230154
230191,230210
20 HCMV000.5 , HCMV000.5 , HCMV000.5 , HCMV164 , HCMV164 , HCMV164 , HCMV203 , HCMV203 , HCMV203   unknown, HCMV specific
unknown, HCMV specific
unknown, HCMV specific
unknown, HCMV specific
unknown, HCMV specific
unknown, HCMV specific
unknown, HCMV specific protein J1
unknown, HCMV specific protein J1
unknown, HCMV specific protein J1 
22  2.00 77696,77715
178161,178180
20 HCMV067 , HCMV149   structural protein
unknown, HCMV/CCMV specific 
23  2.00 174957,174977
175150,175170
21 IGR100, IGR100  intergenic region 
25  4.00 1,25
554,578
189820,189844
190373,190397
229710,229734
230263,230287
25 HCMV000.5 , HCMV000.5 , HCMV164 , HCMV164 , HCMV203 , HCMV203   unknown, HCMV specific
unknown, HCMV specific
unknown, HCMV specific
unknown, HCMV specific
unknown, HCMV specific protein J1
unknown, HCMV specific protein J1 
27  2.00 150104,150124
150149,150169
21 IGR81, IGR81  intergenic region 
29  2.00 41689,41708
146176,146195
20 HCMV046 , HCMV115   large structural phosphoprotein, tegument protein pp150
envelope glycoprotein UL100 


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