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Repeat Table for Human Herpesvirus 5 Toledo

The tandem repeats listed in the table were identified using the Tandem Repeat Finder by G. Genson
"Tandem repeats finder: a program to analyze DNA sequences" Nucleic Acids Research (1999) Vol. 27, No. 2, pp. 573-580.
Repeat Name Copy # Location Length Gene & Intergenic Id(s) Definitions-Comments
1  3.30 15344,15378 11 IGRi13  intergenic region [Davison et al. locate a fragment of UL128 and define four small new genes they name UL148A, UL148B, UL148C and UL148D within this region between UL130 and UL150 (The human cytomegalovirus genome revisited: comparison with the chimpanzee cytomegalovirus genome, J Gen Virol. 2003 Jan;84,Pt 1:17-28).] 
2  3.00 355,392 13 HCMV000.5   unknown, HCMV specific 
3  2.10 400,428 14 HCMV000.5   unknown, HCMV specific 
4  15.20 339,512 11 HCMV000.5   unknown, HCMV specific 
5  3.50 18751,18824 21 HCMV025   glycoprotein 
6  2.20 33764,33790 12 HCMV041   unknown, herpesvirus specific UL27 protein 
7  3.40 93677,93804 37 HCMV074 , HCMV075 , IGR54  unknown, HCMV specific
unknown, HCMV specific
intergenic region [oriLyt maps to a large region between 91,751 and 93,299, starting in IGR53, spanning UL60 and IGR54 and ending in UL61.] 
8  2.50 112266,112310 18 HCMV091   DNA packaging protein 
9  2.20 118150,118190 19 HCMV094 , HCMV095   protease and minor capsid scaffold protein UL80
major capsid scaffold protein 
10  2.70 171855,171886 12 HCMV139   immediate-early transcriptional regulator 
11  2.10 189970,189998 14 HCMV164   unknown, HCMV specific 
12  3.10 190011,190050 13 HCMV164   unknown, HCMV specific 
13  14.60 189886,190054 12 HCMV164   unknown, HCMV specific 
14  3.10 195809,195899 29 HCMV169   unknown, HCMV specific 
15  3.00 228296,228331 12 HCMV202   transcriptional transactivator, tegument protein, pTRS1 
16  3.00 230064,230101 13 HCMV203   unknown, HCMV specific protein J1 
17  2.10 230109,230137 14 HCMV203   unknown, HCMV specific protein J1 
18  15.20 230048,230221 11 HCMV203   unknown, HCMV specific protein J1 


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