Repeat Table

Basic Search | Intermediate Search | Sequence Search | Gene Image Map| Home

Repeat Table for Human Herpesvirus 8 BC-1

The tandem repeats listed in the table were identified using the Tandem Repeat Finder by G. Genson
"Tandem repeats finder: a program to analyze DNA sequences" Nucleic Acids Research (1999) Vol. 27, No. 2, pp. 573-580.

Repeat Name Repeat Type Copy # Location Length Gene & Intergenic Id(s) Definitions-Comments
TR terminal 35.02 1,28054 801 IGR1 intergenic region
TRvar terminal 1.00 28036,28241
28241,28241 206 IGR1, IGR1 intergenic region
frnk tandem 16.60 52526,52857 20 IGR12.1 intergenic region [522 nt inverted repeat, INV1, at 51377-51899 matches 100% reverse compliment with 147603-148119. tandem repeats, named frnk, 52526-52857, period 20, copy # 16.6, 100% matches, no insert/deletes, score 664 and 52852-53143, copy # 9.7, period 30, 100% matches, no insert/deletes, score 584.]
frnk tandem 9.70 52852,53143 30 IGR12.1 intergenic region [522 nt inverted repeat, INV1, at 51377-51899 matches 100% reverse compliment with 147603-148119. tandem repeats, named frnk, 52526-52857, period 20, copy # 16.6, 100% matches, no insert/deletes, score 664 and 52852-53143, copy # 9.7, period 30, 100% matches, no insert/deletes, score 584.]
vnct tandem 12.90 58016,58183 13 IGR15 intergenic region [tandem repeat, vnct, 58016-58183 with period 13, 100% matches, no insert/deletes, score 336. ]
waka/jwka tandem 2.00 120919,121266 174 KSHV062 unknown
zppa tandem 13.40 146364,146671 23 IGR54 intergenic region [Two tandem repeats, named zppa, from 146364-146671 with period 23, 100% matches, no inserts/deletes, score 616 and from 146672-146842, period 23, 100% matches, no inserts/deletes, score 342. 522 nt inverted repeat, INV1, at 147603-148119, matches 100% reverse compliment with 51377-51899.]
zppa tandem 7.40 146672,146842 23 IGR54 intergenic region [Two tandem repeats, named zppa, from 146364-146671 with period 23, 100% matches, no inserts/deletes, score 616 and from 146672-146842, period 23, 100% matches, no inserts/deletes, score 342. 522 nt inverted repeat, INV1, at 147603-148119, matches 100% reverse compliment with 51377-51899.]
moi tandem 4.50 152769,152916 32 KSHV078 latency-associated nuclear antigen
moi tandem 6.30 153010,153270 41 KSHV078 latency-associated nuclear antigen
moi tandem 57.10 152899,153752 15 KSHV078 latency-associated nuclear antigen
moi tandem 4.20 153010,153270 63 KSHV078 latency-associated nuclear antigen
moi tandem 25.40 153235,154011 29 KSHV078 latency-associated nuclear antigen
moi tandem 11.20 153010,153444 40 KSHV078 latency-associated nuclear antigen
moi tandem 28.80 153346,154017
153988,154213 29 KSHV078 , KSHV078 latency-associated nuclear antigen
latency-associated nuclear antigen
moi tandem 10.90 153236,153581
153581,153756 46 KSHV078 , KSHV078 latency-associated nuclear antigen
latency-associated nuclear antigen
moi tandem 31.80 153746,154213 15 KSHV078 latency-associated nuclear antigen
moi tandem 22.40 154256,154524 12 KSHV078 latency-associated nuclear antigen
mdsk tandem 21.10 165341,165700 17 IGR61 intergenic region
csmc inverted 2.00 51377,51899
147603,148119 523 IGR12.1, IGR54 522 nt inverted repeat, INV1, at 51377-51899 matches 100% reverse compliment with 147603-148119. tandem repeats, named frnk, 52526-52857, period 20, copy # 16.6, 100% matches, no insert/deletes, score 664 and 52852-53143, copy # 9.7, period 30, 100% matches, no insert/deletes, score 584.
intergenic region [Two tandem repeats, named zppa, from 146364-146671 with period 23, 100% matches, no inserts/deletes, score 616 and from 146672-146842, period 23, 100% matches, no inserts/deletes, score 342. 522 nt inverted repeat, INV1, at 147603-148119, matches 100% reverse compliment with 51377-51899.]
dbris1 inverted 2.00 51984,52133
147334,147483 150 IGR12.1, IGR54 522 nt inverted repeat, INV1, at 51377-51899 matches 100% reverse compliment with 147603-148119. tandem repeats, named frnk, 52526-52857, period 20, copy # 16.6, 100% matches, no insert/deletes, score 664 and 52852-53143, copy # 9.7, period 30, 100% matches, no insert/deletes, score 584.
intergenic region [Two tandem repeats, named zppa, from 146364-146671 with period 23, 100% matches, no inserts/deletes, score 616 and from 146672-146842, period 23, 100% matches, no inserts/deletes, score 342. 522 nt inverted repeat, INV1, at 147603-148119, matches 100% reverse compliment with 51377-51899.]
dbris2 inverted 2.00 52075,52146
147321,147392 150 IGR12.1, IGR54 522 nt inverted repeat, INV1, at 51377-51899 matches 100% reverse compliment with 147603-148119. tandem repeats, named frnk, 52526-52857, period 20, copy # 16.6, 100% matches, no insert/deletes, score 664 and 52852-53143, copy # 9.7, period 30, 100% matches, no insert/deletes, score 584.
intergenic region [Two tandem repeats, named zppa, from 146364-146671 with period 23, 100% matches, no inserts/deletes, score 616 and from 146672-146842, period 23, 100% matches, no inserts/deletes, score 342. 522 nt inverted repeat, INV1, at 147603-148119, matches 100% reverse compliment with 51377-51899.]
dbris3 inverted 2.00 52245,52302
147142,147199 58 IGR12.1, IGR54 522 nt inverted repeat, INV1, at 51377-51899 matches 100% reverse compliment with 147603-148119. tandem repeats, named frnk, 52526-52857, period 20, copy # 16.6, 100% matches, no insert/deletes, score 664 and 52852-53143, copy # 9.7, period 30, 100% matches, no insert/deletes, score 584.
intergenic region [Two tandem repeats, named zppa, from 146364-146671 with period 23, 100% matches, no inserts/deletes, score 616 and from 146672-146842, period 23, 100% matches, no inserts/deletes, score 342. 522 nt inverted repeat, INV1, at 147603-148119, matches 100% reverse compliment with 51377-51899.]

Los Alamos National Laboratory • Est 1943

Repeat Name	Repeat Type	Copy #	Location	Length	Gene & Intergenic Id(s)	Definitions-Comments
TR	terminal	35.02	1,28054	801	IGR1	intergenic region
TRvar	terminal	1.00	28036,28241 28241,28241	206	IGR1, IGR1	intergenic region
frnk	tandem	16.60	52526,52857	20	IGR12.1	intergenic region [522 nt inverted repeat, INV1, at 51377-51899 matches 100% reverse compliment with 147603-148119. tandem repeats, named frnk, 52526-52857, period 20, copy # 16.6, 100% matches, no insert/deletes, score 664 and 52852-53143, copy # 9.7, period 30, 100% matches, no insert/deletes, score 584.]
frnk	tandem	9.70	52852,53143	30	IGR12.1	intergenic region [522 nt inverted repeat, INV1, at 51377-51899 matches 100% reverse compliment with 147603-148119. tandem repeats, named frnk, 52526-52857, period 20, copy # 16.6, 100% matches, no insert/deletes, score 664 and 52852-53143, copy # 9.7, period 30, 100% matches, no insert/deletes, score 584.]
vnct	tandem	12.90	58016,58183	13	IGR15	intergenic region [tandem repeat, vnct, 58016-58183 with period 13, 100% matches, no insert/deletes, score 336. ]
waka/jwka	tandem	2.00	120919,121266	174	KSHV062	unknown
zppa	tandem	13.40	146364,146671	23	IGR54	intergenic region [Two tandem repeats, named zppa, from 146364-146671 with period 23, 100% matches, no inserts/deletes, score 616 and from 146672-146842, period 23, 100% matches, no inserts/deletes, score 342. 522 nt inverted repeat, INV1, at 147603-148119, matches 100% reverse compliment with 51377-51899.]
zppa	tandem	7.40	146672,146842	23	IGR54	intergenic region [Two tandem repeats, named zppa, from 146364-146671 with period 23, 100% matches, no inserts/deletes, score 616 and from 146672-146842, period 23, 100% matches, no inserts/deletes, score 342. 522 nt inverted repeat, INV1, at 147603-148119, matches 100% reverse compliment with 51377-51899.]
moi	tandem	4.50	152769,152916	32	KSHV078	latency-associated nuclear antigen
moi	tandem	6.30	153010,153270	41	KSHV078	latency-associated nuclear antigen
moi	tandem	57.10	152899,153752	15	KSHV078	latency-associated nuclear antigen
moi	tandem	4.20	153010,153270	63	KSHV078	latency-associated nuclear antigen
moi	tandem	25.40	153235,154011	29	KSHV078	latency-associated nuclear antigen
moi	tandem	11.20	153010,153444	40	KSHV078	latency-associated nuclear antigen
moi	tandem	28.80	153346,154017 153988,154213	29	KSHV078 , KSHV078	latency-associated nuclear antigen latency-associated nuclear antigen
moi	tandem	10.90	153236,153581 153581,153756	46	KSHV078 , KSHV078	latency-associated nuclear antigen latency-associated nuclear antigen
moi	tandem	31.80	153746,154213	15	KSHV078	latency-associated nuclear antigen
moi	tandem	22.40	154256,154524	12	KSHV078	latency-associated nuclear antigen
mdsk	tandem	21.10	165341,165700	17	IGR61	intergenic region
csmc	inverted	2.00	51377,51899 147603,148119	523	IGR12.1, IGR54	522 nt inverted repeat, INV1, at 51377-51899 matches 100% reverse compliment with 147603-148119. tandem repeats, named frnk, 52526-52857, period 20, copy # 16.6, 100% matches, no insert/deletes, score 664 and 52852-53143, copy # 9.7, period 30, 100% matches, no insert/deletes, score 584. intergenic region [Two tandem repeats, named zppa, from 146364-146671 with period 23, 100% matches, no inserts/deletes, score 616 and from 146672-146842, period 23, 100% matches, no inserts/deletes, score 342. 522 nt inverted repeat, INV1, at 147603-148119, matches 100% reverse compliment with 51377-51899.]
dbris1	inverted	2.00	51984,52133 147334,147483	150	IGR12.1, IGR54	522 nt inverted repeat, INV1, at 51377-51899 matches 100% reverse compliment with 147603-148119. tandem repeats, named frnk, 52526-52857, period 20, copy # 16.6, 100% matches, no insert/deletes, score 664 and 52852-53143, copy # 9.7, period 30, 100% matches, no insert/deletes, score 584. intergenic region [Two tandem repeats, named zppa, from 146364-146671 with period 23, 100% matches, no inserts/deletes, score 616 and from 146672-146842, period 23, 100% matches, no inserts/deletes, score 342. 522 nt inverted repeat, INV1, at 147603-148119, matches 100% reverse compliment with 51377-51899.]
dbris2	inverted	2.00	52075,52146 147321,147392	150	IGR12.1, IGR54	522 nt inverted repeat, INV1, at 51377-51899 matches 100% reverse compliment with 147603-148119. tandem repeats, named frnk, 52526-52857, period 20, copy # 16.6, 100% matches, no insert/deletes, score 664 and 52852-53143, copy # 9.7, period 30, 100% matches, no insert/deletes, score 584. intergenic region [Two tandem repeats, named zppa, from 146364-146671 with period 23, 100% matches, no inserts/deletes, score 616 and from 146672-146842, period 23, 100% matches, no inserts/deletes, score 342. 522 nt inverted repeat, INV1, at 147603-148119, matches 100% reverse compliment with 51377-51899.]
dbris3	inverted	2.00	52245,52302 147142,147199	58	IGR12.1, IGR54	522 nt inverted repeat, INV1, at 51377-51899 matches 100% reverse compliment with 147603-148119. tandem repeats, named frnk, 52526-52857, period 20, copy # 16.6, 100% matches, no insert/deletes, score 664 and 52852-53143, copy # 9.7, period 30, 100% matches, no insert/deletes, score 584. intergenic region [Two tandem repeats, named zppa, from 146364-146671 with period 23, 100% matches, no inserts/deletes, score 616 and from 146672-146842, period 23, 100% matches, no inserts/deletes, score 342. 522 nt inverted repeat, INV1, at 147603-148119, matches 100% reverse compliment with 51377-51899.]